View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_34 (Length: 422)
Name: NF1643_low_34
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 45746108 - 45745702
Alignment:
| Q |
1 |
atttaaaacctgagtggcaacgtttgaacgcaaacgtgaaaaagggtaaaggttgtgagtggtagggcacctctctacaatcttgatctttttggtcagt |
100 |
Q |
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| T |
45746108 |
atttaaaaccttagttgcaacacttgaacgcaaacatgaaaaagg-tcaaggttgtgtgtggtagggcacctctctacaatcttgatctttttggtcagt |
45746010 |
T |
|
| Q |
101 |
aacatgatgatttgtatttgatattttgttatgaatgttgatgttgctaacttggtctgcatcctcatcatatttcacctgcttttgagtcatgtaaaag |
200 |
Q |
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| T |
45746009 |
aacatgatgatttgtatttgatattttgttatgaatgttgatgttgctaacttggtctgcatcctcatcatatttcacctgcttttgagtcatgtaaaag |
45745910 |
T |
|
| Q |
201 |
taacaaaaacaaatttttaaccagatcattcgacattttttattatcaatactttggtatcatacgagaatgtaacagtccagctaggtgaacaatttcc |
300 |
Q |
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| T |
45745909 |
taacaaaaacaaatttttaaccagatcattcaacattttttattatcaatgctttggtatcatacgagaatgtaacagtccagctaggtgaacaatttcc |
45745810 |
T |
|
| Q |
301 |
taataaaatggaaatagctacatacctgaagcttcaaaggccttgcaaatttatgcacacagcctttgtcatctttcaccacatcaaatggtccatcttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45745809 |
taataaaatggaaatagctacatacctgaagcttcaaaggccttgcaaatttatgcacacagcctttgtcatctttcaccacatcaaatggtccatcttt |
45745710 |
T |
|
| Q |
401 |
atcaaagc |
408 |
Q |
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|||||||| |
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| T |
45745709 |
atcaaagc |
45745702 |
T |
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