View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_low_35 (Length: 420)

Name: NF1643_low_35
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_low_35
NF1643_low_35
[»] chr6 (13 HSPs)
chr6 (18-415)||(6585286-6585683)
chr6 (280-410)||(6603256-6603386)
chr6 (282-413)||(6402777-6402908)
chr6 (282-413)||(7119074-7119205)
chr6 (282-413)||(7131552-7131683)
chr6 (280-410)||(6432076-6432206)
chr6 (284-415)||(19632358-19632489)
chr6 (286-415)||(10579785-10579915)
chr6 (272-415)||(6415873-6416016)
chr6 (282-400)||(6423134-6423252)
chr6 (284-401)||(7994245-7994362)
chr6 (337-405)||(6586169-6586237)
chr6 (371-415)||(14802342-14802386)
[»] chr3 (4 HSPs)
chr3 (286-411)||(51113834-51113959)
chr3 (277-415)||(51764489-51764627)
chr3 (272-415)||(13470781-13470924)
chr3 (282-404)||(514788-514910)
[»] chr2 (2 HSPs)
chr2 (286-411)||(45245138-45245263)
chr2 (286-410)||(1037718-1037842)
[»] chr4 (12 HSPs)
chr4 (286-405)||(546834-546953)
chr4 (284-397)||(8184097-8184210)
chr4 (309-405)||(1548483-1548579)
chr4 (282-415)||(1513456-1513586)
chr4 (287-391)||(370842-370946)
chr4 (286-390)||(53761844-53761947)
chr4 (286-410)||(55908782-55908906)
chr4 (135-178)||(51169285-51169328)
chr4 (355-405)||(558488-558538)
chr4 (378-410)||(566202-566234)
chr4 (299-415)||(640849-640965)
chr4 (282-334)||(21834436-21834488)
[»] chr1 (2 HSPs)
chr1 (272-415)||(19468548-19468691)
chr1 (299-410)||(7554422-7554533)
[»] chr7 (3 HSPs)
chr7 (282-415)||(15092200-15092333)
chr7 (283-400)||(10170145-10170262)
chr7 (283-400)||(10177670-10177787)
[»] chr5 (1 HSPs)
chr5 (267-415)||(20478131-20478279)
[»] scaffold0807 (1 HSPs)
scaffold0807 (354-405)||(1526-1577)
[»] chr8 (2 HSPs)
chr8 (355-405)||(32151291-32151341)
chr8 (372-415)||(18315322-18315365)
[»] scaffold0041 (1 HSPs)
scaffold0041 (372-415)||(39191-39234)


Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 6585683 - 6585286
Alignment:
Q  18 ccgttgaactgaaatatgtgaaacatttgacacataagaactcatcagaagcaccggaacataaagttgaatttctgagagtagatacttgagtagaatc 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6585683 ccgttgaactgaaatctgtgaaacatttgacacataagaactcatcagatgcaccggaacataaagttgaatttctgagagtagatacttgagtagaatc 6585584  T
Q  118 tctcttctggtgattaccgtctgaacttccagcatcaagtccttcactgttttcatgaatacatgtgtaatttagatatttatataaggactgaaaagag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6585583 tctcttctggtgattaccgtctgaacttccagcatcaagtccttcaccgttttcatgaatacatgtgtaatttagatatttatataaggactgaaaagag 6585484  T
Q  218 agtcaatacacactcttaagtacaagacatactcaatttacatatacagaaggcatccatgttttctcagttgtgtgcaaatttctaccacatgtttcag 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6585483 agtcaatactcactcttaagtacaagacatactcaatttacatatacagaaggcatccatgttttctcagttgtgtgcaaatttctaccacatgtttcag 6585384  T
Q  318 tcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatcaccaacctttg 415  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6585383 tcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatcatcaacctttg 6585286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 280 - 410
Target Start/End: Complemental strand, 6603386 - 6603256
Alignment:
Q  280 tttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactct 379  Q
    |||||||||||| ||||  |||||||||||||||||| ||| |||| ||||||||  | ||||  ||||| |||||||||||||||| ||| ||||||||    
T  6603386 tttctcagttgtttgcagttttctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaactct 6603287  T
Q  380 ttgagatcacatagagtgtttcatcaccaac 410  Q
    |||||||| |||||| |||||||||| ||||    
T  6603286 ttgagatcgcatagactgtttcatcatcaac 6603256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 282 - 413
Target Start/End: Original strand, 6402777 - 6402908
Alignment:
Q  282 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 381  Q
    |||||||||||| ||  |||||| ||||||||||  |||||| | ||||||||| | |||| || ||| |||||||| ||||||| ||  |||| |||||    
T  6402777 tctcagttgtgtacagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaataatagtttcaaaagcccactacaattcttt 6402876  T
Q  382 gagatcacatagagtgtttcatcaccaacctt 413  Q
    |||||||||||||||||||||||| |||||||    
T  6402877 gagatcacatagagtgtttcatcatcaacctt 6402908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 413
Target Start/End: Original strand, 7119074 - 7119205
Alignment:
Q  282 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 381  Q
    ||||| |||||||||  ||||| |||||||||||| | | || | ||||||||  | |||| ||||||||||||||||||||||| |  ||||| ||||     
T  7119074 tctcaattgtgtgcagttttcttccacatgtttcacttctttttttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 7119173  T
Q  382 gagatcacatagagtgtttcatcaccaacctt 413  Q
    |||||||||| ||||||||||||| |||||||    
T  7119174 gagatcacatggagtgtttcatcatcaacctt 7119205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 413
Target Start/End: Original strand, 7131552 - 7131683
Alignment:
Q  282 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 381  Q
    ||||| |||||||||  ||||| |||||||||||| | | || | ||||||||  | |||| ||||||||||||||||||||||| |  ||||| ||||     
T  7131552 tctcaattgtgtgcagttttcttccacatgtttcactgctttgtttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 7131651  T
Q  382 gagatcacatagagtgtttcatcaccaacctt 413  Q
    |||||||||| ||||||||||||| |||||||    
T  7131652 gagatcacatggagtgtttcatcatcaacctt 7131683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 280 - 410
Target Start/End: Original strand, 6432076 - 6432206
Alignment:
Q  280 tttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactct 379  Q
    ||||||| |||||||||  ||||||||||| |||||| |||||||| ||||||||| ||||||   | ||| ||||||| || |||| || ||||| |||    
T  6432076 tttctcaattgtgtgcatttttctaccacaagtttcactcccttctgtgtgacattatcacaattgtacaggaatagttgcagaagcccacaacaattct 6432175  T
Q  380 ttgagatcacatagagtgtttcatcaccaac 410  Q
    || |||||||||| |||||||||||| ||||    
T  6432176 ttaagatcacataaagtgtttcatcatcaac 6432206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 284 - 415
Target Start/End: Original strand, 19632358 - 19632489
Alignment:
Q  284 tcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttga 383  Q
    |||||||| ||||  |||||||||| ||||||| |||||||| ||||| |||  |||||  ||||||||| |||| ||||||| || ||||| |||||||    
T  19632358 tcagttgtttgcagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttga 19632457  T
Q  384 gatcacatagagtgtttcatcaccaacctttg 415  Q
    ||||||| | |||   |||||| |||||||||    
T  19632458 gatcacaaaaagttgctcatcatcaacctttg 19632489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 415
Target Start/End: Complemental strand, 10579915 - 10579785
Alignment:
Q  286 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaa-tagttccaaaagcgcagaacaactctttgag 384  Q
    |||||||||||  |||||||||||||||| | |||||||| ||||||  ||| |||   ||||||||| |||||||||||||  | ||||| ||||||||    
T  10579915 agttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaaatagttccaaaagccgacaacaattctttgag 10579816  T
Q  385 atcacatagagtgtttcatcaccaacctttg 415  Q
    |||  ||||||||||| |||| |||| ||||    
T  10579815 atcgaatagagtgttttatcatcaacttttg 10579785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 415
Target Start/End: Original strand, 6415873 - 6416016
Alignment:
Q  272 atccatgttttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcaga 371  Q
    ||||||| | ||| |||||||||||  | |||||||||||||||| ||||   | ||||||||| ||||||  ||  |||||||||| ||||||| |       
T  6415873 atccatgctctcttagttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgct 6415972  T
Q  372 acaactctttgagatcacatagagtgtttcatcaccaacctttg 415  Q
    |||| ||||||||||||||||||| |||| ||||  ||||||||    
T  6415973 acaattctttgagatcacatagagagttttatcattaacctttg 6416016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 400
Target Start/End: Original strand, 6423134 - 6423252
Alignment:
Q  282 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 381  Q
    ||||| |||||||||  ||  ||||||| |||||||||| || | ||| ||||  |||||| |||  |||||||||| ||||| | || |||||||||||    
T  6423134 tctcaattgtgtgcagtttaataccacacgtttcagtcctttgtttgttacataatcacaatcttcaagtaatagttgcaaaatcccacaacaactcttt 6423233  T
Q  382 gagatcacatagagtgttt 400  Q
    |||||| ||||||||||||    
T  6423234 gagatcgcatagagtgttt 6423252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 401
Target Start/End: Complemental strand, 7994362 - 7994245
Alignment:
Q  284 tcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttga 383  Q
    ||||||| |||||  |||||||||||||||||| ||||| ||  || ||||  | ||||  ||  |||||||||| ||||||  |||||||| |||||||    
T  7994362 tcagttgcgtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccagaacaattctttga 7994263  T
Q  384 gatcacatagagtgtttc 401  Q
    ||||||||| ||||||||    
T  7994262 gatcacatatagtgtttc 7994245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 405
Target Start/End: Complemental strand, 6586237 - 6586169
Alignment:
Q  337 tcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatca 405  Q
    ||||||||| ||||| ||||||||||||||  || |||| ||||||||||| || ||||||||||||||    
T  6586237 tcacaacctatcagtgatagttccaaaagcctaggacaaatctttgagatcgcacagagtgtttcatca 6586169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 14802342 - 14802386
Alignment:
Q  371 aacaactctttgagatcacatagagtgtttcatcaccaacctttg 415  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||    
T  14802342 aacaattctttgaaatcacatagagtgtttcatcatcaacctttg 14802386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 286 - 411
Target Start/End: Complemental strand, 51113959 - 51113834
Alignment:
Q  286 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 385  Q
    |||| ||||||  ||||||||||||| |||| |||||||| ||||||||  | ||||  ||||||||| |||| ||||||| || |||||||||| ||||    
T  51113959 agttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgaga 51113860  T
Q  386 tcacatagagtgtttcatcaccaacc 411  Q
    |||||||||||||||||||| |||||    
T  51113859 tcacatagagtgtttcatcatcaacc 51113834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 277 - 415
Target Start/End: Complemental strand, 51764627 - 51764489
Alignment:
Q  277 tgttttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaac 376  Q
    |||| ||||| |||||||||  |||| ||||||||||||| ||||||||   ||||||| ||||||  || ||||||||||| ||||||| |  |||||     
T  51764627 tgttctctcaattgtgtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaat 51764528  T
Q  377 tctttgagatcacatagagtgtttcatcaccaacctttg 415  Q
    ||||||||||| |||||||||||| |||| |||| ||||    
T  51764527 tctttgagatcgcatagagtgttttatcatcaacttttg 51764489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 415
Target Start/End: Complemental strand, 13470924 - 13470781
Alignment:
Q  272 atccatgttttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcaga 371  Q
    ||||||| | ||| || ||||||||  | |||||||||||||||| |||||  | ||||||||| | ||||  ||  |||||||||| ||||||| || |    
T  13470924 atccatgctctcttagctgtgtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccaca 13470825  T
Q  372 acaactctttgagatcacatagagtgtttcatcaccaacctttg 415  Q
    |||| |||||||||||| ||||||||||| ||||  ||||||||    
T  13470824 acaattctttgagatcatatagagtgttttatcattaacctttg 13470781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 404
Target Start/End: Complemental strand, 514910 - 514788
Alignment:
Q  282 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 381  Q
    ||||||| |||||||  |||  |||||||| |||| |||| ||| ||||| |  |||||||  || ||||||||||| ||||||| || | ||||||||     
T  514910 tctcagtcgtgtgcagtttttcaccacatgcttcactcccgtctctgtgataccttcacaattttgcagtaatagttgcaaaagcccacagcaactcttc 514811  T
Q  382 gagatcacatagagtgtttcatc 404  Q
    ||||||||||  |||| ||||||    
T  514810 gagatcacatgaagtgcttcatc 514788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 286 - 411
Target Start/End: Complemental strand, 45245263 - 45245138
Alignment:
Q  286 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 385  Q
    |||||||||||| |||||||||||||||||| |||||| | ||||||||  | |||   ||||| |||||||| ||||||| ||  ||||||||||||||    
T  45245263 agttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgaga 45245164  T
Q  386 tcacatagagtgtttcatcaccaacc 411  Q
    |||||| ||||||||||||| |||||    
T  45245163 tcacatggagtgtttcatcatcaacc 45245138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 410
Target Start/End: Complemental strand, 1037842 - 1037718
Alignment:
Q  286 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 385  Q
    |||||||||||  |||| || ||||||||||  || |||| |||||| |  ||||||  || ||| || ||||  |||||| || ||||| |||||||||    
T  1037842 agttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgaga 1037743  T
Q  386 tcacatagagtgtttcatcaccaac 410  Q
    ||| |||||||||||||||| ||||    
T  1037742 tcatatagagtgtttcatcatcaac 1037718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 405
Target Start/End: Original strand, 546834 - 546953
Alignment:
Q  286 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 385  Q
    |||| ||||||  |||||| ||||||||||| |||||||| ||||||||    |||  ||| |||||| | |||||||||| || |||||||||||||||    
T  546834 agttttgtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccacaacaactctttgaga 546933  T
Q  386 tcacatagagtgtttcatca 405  Q
    ||||||||||||||||||||    
T  546934 tcacatagagtgtttcatca 546953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 397
Target Start/End: Complemental strand, 8184210 - 8184097
Alignment:
Q  284 tcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttga 383  Q
    |||||||||||||| |||||| |||||| |||| |||||  | |||||   ||||||||  || |||||| |||||||||||| || |||||||||||||    
T  8184210 tcagttgtgtgcaattttctagcacatgcttcactccctcatctgtgatcatttcacaattttccagtaacagttccaaaagcccacaacaactctttga 8184111  T
Q  384 gatcacatagagtg 397  Q
    |||  |||||||||    
T  8184110 gattgcatagagtg 8184097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 405
Target Start/End: Complemental strand, 1548579 - 1548483
Alignment:
Q  309 atgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatca 405  Q
    |||||||| |||||||| ||||| ||||| ||||| |||  |||| |  | ||||||| || ||||||||||||||||||||| |||||||||||||    
T  1548579 atgtttcactcccttctctgtgatatttttacaacgtttttgtaacaagtgcaaaagcccacaacaactctttgagatcacattgagtgtttcatca 1548483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 415
Target Start/End: Complemental strand, 1513586 - 1513456
Alignment:
Q  282 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 381  Q
    |||||||||||||||  |||||| |||| | |||| |||| ||| ||||||| |   ||||||||||||||  |||| ||||||| ||  ||||| ||||    
T  1513586 tctcagttgtgtgcatttttctagcacaagcttcactcccatctctgtgacaat---acaacctttcagtatgagttgcaaaagcccacgacaacacttt 1513490  T
Q  382 gagatcacatagagtgtttcatcaccaacctttg 415  Q
    ||||| || ||||||||||||||| |||| ||||    
T  1513489 gagattacgtagagtgtttcatcatcaacatttg 1513456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 391
Target Start/End: Original strand, 370842 - 370946
Alignment:
Q  287 gttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagat 386  Q
    ||||||||||  |||  |||||||| |||| |||| ||| ||||| |  |||||||  || ||||||||||| |||||||  | ||||||||||||||||    
T  370842 gttgtgtgcagtttttcaccacatgcttcactcccatctttgtgataccttcacaattttgcagtaatagttgcaaaagccgacaacaactctttgagat 370941  T
Q  387 cacat 391  Q
    |||||    
T  370942 cacat 370946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 390
Target Start/End: Complemental strand, 53761947 - 53761844
Alignment:
Q  286 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 385  Q
    |||||||||||  ||||| |||||||||||| |||||| |  |||||||| ||||||  ||||||||||| || ||||||| ||  |||| |||| ||||    
T  53761947 agttgtgtgcagttttcttccacatgtttcactcccttgtccgtgacattatcacaatgtttcagtaata-ttgcaaaagcccacgacaattcttcgaga 53761849  T
Q  386 tcaca 390  Q
    |||||    
T  53761848 tcaca 53761844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 410
Target Start/End: Complemental strand, 55908906 - 55908782
Alignment:
Q  286 agttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 385  Q
    |||||||||||  |||| || ||||||||||  || |||| |||||| |  ||||||  || ||| || ||||  |||||| || ||||| |||||||||    
T  55908906 agttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgaga 55908807  T
Q  386 tcacatagagtgtttcatcaccaac 410  Q
    ||| |||||||||||||||| ||||    
T  55908806 tcatatagagtgtttcatcatcaac 55908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 51169285 - 51169328
Alignment:
Q  135 cgtctgaacttccagcatcaagtccttcactgttttcatgaata 178  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||    
T  51169285 cgtctgaacttccagcatcaagtcctctactgtttgcatgaata 51169328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 558488 - 558538
Alignment:
Q  355 agttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatca 405  Q
    |||||||||||| ||  |||||||||||||||||||| ||||| |||||||    
T  558488 agttccaaaagcccacgacaactctttgagatcacatggagtgcttcatca 558538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 410
Target Start/End: Original strand, 566202 - 566234
Alignment:
Q  378 ctttgagatcacatagagtgtttcatcaccaac 410  Q
    |||||||||||||||||||||||||||| ||||    
T  566202 ctttgagatcacatagagtgtttcatcatcaac 566234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 415
Target Start/End: Original strand, 640849 - 640965
Alignment:
Q  299 tttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgt 398  Q
    ||||||||||||| |||| |||||||| ||| ||||  | |||| ||| |||||| || | ||||||  ||   ||| |||||||| |||| ||||||||    
T  640849 tttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgtagagtgt 640948  T
Q  399 ttcatcaccaacctttg 415  Q
    ||||||| |||| ||||    
T  640949 ttcatcatcaacgtttg 640965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 21834488 - 21834436
Alignment:
Q  282 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacat 334  Q
    |||||||||||| ||  ||||||||| |||||||| |||||||| ||||||||    
T  21834488 tctcagttgtgtacatctttctaccatatgtttcattcccttctctgtgacat 21834436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 272 - 415
Target Start/End: Complemental strand, 19468691 - 19468548
Alignment:
Q  272 atccatgttttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcaga 371  Q
    ||||||||| ||||||||||| |||| |||||  ||||||||||| ||| |||| ||||||||  | |||||| | ||  |||| |||||||||  || |    
T  19468691 atccatgttctctcagttgtgagcaattttctttcacatgtttcactcctttctctgtgacatcattacaaccgtccacaaataattccaaaagtccaca 19468592  T
Q  372 acaactctttgagatcacatagagtgtttcatcaccaacctttg 415  Q
    |||  |||||||||||||||| |||||||||||| |||||||||    
T  19468591 acagttctttgagatcacataaagtgtttcatcatcaacctttg 19468548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 299 - 410
Target Start/End: Original strand, 7554422 - 7554533
Alignment:
Q  299 tttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgt 398  Q
    ||||||||||||| |||| |||||| | ||||||||| ||||| ||||||||||| ||||  |||||  ||  ||||||||||||||||| ||||||||     
T  7554422 tttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtccaccacaactctttgagatcatatagagtgc 7554521  T
Q  399 ttcatcaccaac 410  Q
    ||||||| ||||    
T  7554522 ttcatcatcaac 7554533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 415
Target Start/End: Complemental strand, 15092333 - 15092200
Alignment:
Q  282 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 381  Q
    ||||| |||||||||  |||||| ||||||||||| ||||   | ||||||||| | ||||  ||  |||||||||| ||||||| || ||||| |||||    
T  15092333 tctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaaagcccacaacaattcttt 15092234  T
Q  382 gagatcacatagagtgtttcatcaccaacctttg 415  Q
    |||||| |||||||||||| ||||  ||||||||    
T  15092233 gagatcgcatagagtgttttatcattaacctttg 15092200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 400
Target Start/End: Complemental strand, 10170262 - 10170145
Alignment:
Q  283 ctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttg 382  Q
    |||||||||| |||  |||||  ||||||||||| ||| |||| ||||||||  | ||||   ||||  ||||||| ||||||  || |||||  |||||    
T  10170262 ctcagttgtgagcagttttctttcacatgtttcactcctttctctgtgacatcattacaattgttcacaaatagtttcaaaagtccacaacaatactttg 10170163  T
Q  383 agatcacatagagtgttt 400  Q
    ||||||||||||||||||    
T  10170162 agatcacatagagtgttt 10170145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 400
Target Start/End: Complemental strand, 10177787 - 10177670
Alignment:
Q  283 ctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttg 382  Q
    |||||||||| |||  |||||  ||||||||||| ||| |||| ||||||||  | ||||   ||||  ||||||| ||||||  || |||||  |||||    
T  10177787 ctcagttgtgagcagttttctttcacatgtttcactcctttctctgtgacatcattacaattgttcacaaatagtttcaaaagtccacaacaatactttg 10177688  T
Q  383 agatcacatagagtgttt 400  Q
    ||||||||||||||||||    
T  10177687 agatcacatagagtgttt 10177670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 415
Target Start/End: Complemental strand, 20478279 - 20478131
Alignment:
Q  267 aaggcatccatgttttctcagttgtgtgcaaatttctaccacatgtttcagtcccttctatgtgacattttcacaacctttcagtaatagttccaaaagc 366  Q
    |||||||||||| | |||||||||||||||  ||||||| |||||||||  ||| |||  ||||||||| || |||  |||||||| || || |||||||    
T  20478279 aaggcatccatgctctctcagttgtgtgcagttttctacgacatgtttcgctcctttcattgtgacattatcgcaatttttcagtagtatttgcaaaagc 20478180  T
Q  367 gcagaacaactctttgagatcacatagagtgtttcatcaccaacctttg 415  Q
     || ||||| || ||||||||||| | | |||||| ||| |||| ||||    
T  20478179 ccacaacaattccttgagatcacagataatgtttcgtcatcaacatttg 20478131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 1577 - 1526
Alignment:
Q  354 tagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatca 405  Q
    ||||||||||| | | |||||| |||||||||||||||||||||||||||||    
T  1577 tagttccaaaatccctgaacaattctttgagatcacatagagtgtttcatca 1526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 32151291 - 32151341
Alignment:
Q  355 agttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatca 405  Q
    |||| ||||||| ||  ||||||||||||||||||||||||||||||||||    
T  32151291 agttgcaaaagcccactacaactctttgagatcacatagagtgtttcatca 32151341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 372 - 415
Target Start/End: Complemental strand, 18315365 - 18315322
Alignment:
Q  372 acaactctttgagatcacatagagtgtttcatcaccaacctttg 415  Q
    |||||||||||||||||||||||||| ||||||| |||| ||||    
T  18315365 acaactctttgagatcacatagagtgcttcatcatcaacttttg 18315322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 39191 - 39234
Alignment:
Q  372 acaactctttgagatcacatagagtgtttcatcaccaacctttg 415  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||    
T  39191 acaactctttgagatcacataaagtgtttcatcattaacctttg 39234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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