View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_36 (Length: 418)
Name: NF1643_low_36
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 7900984 - 7901384
Alignment:
| Q |
1 |
tcaaaaaatattattctttcctatactcagcctctacggaatccaataccttcaaaaaatttatcattattttacaaagtatacaactcattaaggaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7900984 |
tcaaaaaatattattctttcctatactcagcctctacggaatccaataccttcaaaaaatttatcattattttacaaagtatacaactcattaaggaact |
7901083 |
T |
|
| Q |
101 |
accaaattaacctagctcactttttatccttcatgcaacaaactgatagatcattttaccttctcattacaagtattcaannnnnnnnnnnnnnnnnn-- |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
7901084 |
accaaattaacctagctcactttttatccttcatgcaacaaactgatagatcatttcaccttctcaatacaagtattcaaacacacacacacacacacac |
7901183 |
T |
|
| Q |
199 |
gtatatatatgtgcaccacaatgtatctgtactcacaagattcaaaataagtaaaaagaagttaaacatcaagcagaacataatggcaagcttgggaagt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901184 |
gtatatatatgtgcaccacaatgtatctgtactcacaagattcaaaataagtaaaaagaagttaaacatcaagcagaacataatggcaagcttgggaagt |
7901283 |
T |
|
| Q |
299 |
ttcatgtctgtattaaactttctcttatttctctttgttggtttaatctcttcatctgaagctgccataaagaaataccagtttgatgtgagttattata |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901284 |
ttcatgtctgtattaaactttctcttatttctctttgttggtttaatctcttcatctgaagctgccataaagaaataccagtttgatgtgagttattata |
7901383 |
T |
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| Q |
399 |
t |
399 |
Q |
| |
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| |
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| T |
7901384 |
t |
7901384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 253 - 399
Target Start/End: Original strand, 31213273 - 31213419
Alignment:
| Q |
253 |
aaagaagttaaacatcaagcagaacataatggcaagcttgggaagtttcatgtctgtattaaactttctcttatttctctttgttggtttaatctcttca |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
31213273 |
aaagaagttaaacatcaagcagaacataatggcaagcttgggaagtttcacgtctgtattaaactttctgttatttctctttgttggtttattctcttca |
31213372 |
T |
|
| Q |
353 |
tctgaagctgccataaagaaataccagtttgatgtgagttattatat |
399 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
31213373 |
tctgaagctgccataaggaaataccagtttgatgtgagttataatat |
31213419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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