View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_38 (Length: 408)
Name: NF1643_low_38
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 394
Target Start/End: Complemental strand, 32034232 - 32033845
Alignment:
| Q |
8 |
gagcagagaaccatttgggcaacaatgttcactcttaa-agttttaacttttcatttttatattcgagctcaagatctctgattaaaattgaaagaaatt |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
32034232 |
gagccgagaaccatttgggcaacaatgttcactcttaagagttttaacttttcatttttatattcgagctcaaaatctctgattaaaactgaaagaaatt |
32034133 |
T |
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| Q |
107 |
ctcaacttttggatgattaatctaaagaaagaactttttaaatctagaagaacaagtacaaatattgtggaatagtgccaattggcttgatggatgtcag |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32034132 |
ctcaacttttggatgattaatctaaagaaagaactttttaaatctagaagaacaagtacaaatattgtgcaatagtgccaattggcttgatggatgtcag |
32034033 |
T |
|
| Q |
207 |
gtataatgaactttaatgtgaagcttctggccagcttgacagtggccatttttgctacaaatgaagtagaagtcccctgggttggtgaggttgatggaat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32034032 |
gtataatgaactttaatgtgaagcttctggccagcttgacagtggccatttttgctacaaatgaagtagaagtcccctgggttggtgaggttgatggaat |
32033933 |
T |
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| Q |
307 |
cagagccagagtggtaaaaggcctttgcagaatttatgttgcagtgaatgtagtcttggtgactcacctccataacatcatgatattg |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32033932 |
cagagccagagtggtaaaaggcctttgcagaatttatgttgcagtgaatgtagtcttggtgactcacctccataacatcatgatattg |
32033845 |
T |
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