View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_4 (Length: 664)
Name: NF1643_low_4
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 21 - 655
Target Start/End: Complemental strand, 21532562 - 21531928
Alignment:
| Q |
21 |
cataacacaatcgtacaattaattgataaatctttaacctaaagaagaaattaattaaaaatgtttcaattttagtaataattacctaacaatgttagga |
120 |
Q |
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| T |
21532562 |
cataacacaatcgtacaattaattgataattctttaacctaaagaagaaatgaattaaaaatgtttcaattttagtaataattacctaacaatgttagga |
21532463 |
T |
|
| Q |
121 |
tgattcaattctctaagaaacgagacttctctgatgatggaaccaggaacagcattataagtgtcaagaatagagatttgcttaacagcaacgattcgtt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
21532462 |
tgattcaattctctaagaaacgagacttctctgatgatggaaccaggaacagcattataagtgtcaagaatagagatttgcttaacagccacgatttgtt |
21532363 |
T |
|
| Q |
221 |
tagtttcgacgtcgcagcaacggaaaactgtaccgaaaccaccttcaccaagcttctcaagaaactccatatcttcaaacggtatcccttcattgatgtt |
320 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21532362 |
tagtttcgacgtcgcagcaacggaaaactgtaccaaaaccaccttcaccaagcttctcaagaaactccatatcttcaaacggtttcccttcattgatgtt |
21532263 |
T |
|
| Q |
321 |
tttcttgcgccttggattacaagtactgcagcacaattcacatgctatgatgcgaacaaacctaatcacaagaaatttgattgattaattaaataaatta |
420 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21532262 |
tttcttgcgccttggattacaagtactgcagcataattcgcatgctatgatgcgaacaaacctaatcacaagaaattcgattgattaattaaataaatta |
21532163 |
T |
|
| Q |
421 |
agtagaattactgaatgattagagtttgattgatgaagaacttacagagaatcagagtaatttgaatcgtgttcttggagatttctcagcattgtgaaat |
520 |
Q |
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| T |
21532162 |
agtagaattactgaatgattagagtgtgattgatgaagaacttacagagaatcagagtaatttgaatcgtgttcttggagatttctcagcattgtgaaat |
21532063 |
T |
|
| Q |
521 |
ggnnnnnnnnnnnnnnnnnnnnnnnnngatttgaggaagaaaccctaattcttgaggaaaatgatgaaatagcgatgcgaaagaaagagtgagaatttga |
620 |
Q |
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|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21532062 |
gggagaagagaagagagaaagtgagaggatttgaggaagaaaccctaattcttgaggagaatgatgaaatagcgatgcgaaagaaagagtgagattttga |
21531963 |
T |
|
| Q |
621 |
agaagaaagggtttttatttatactttgatctgtg |
655 |
Q |
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| T |
21531962 |
agaagaaagggtttttatttatactttgatctgtg |
21531928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 237 - 303
Target Start/End: Complemental strand, 32241924 - 32241858
Alignment:
| Q |
237 |
gcaacggaaaactgtaccgaaaccaccttcaccaagcttctcaagaaactccatatcttcaaacggt |
303 |
Q |
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| T |
32241924 |
gcaacggaaaactctactgaaacctccttcaccaagcatctcaagaaactccatattttctaacggt |
32241858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 362 - 480
Target Start/End: Complemental strand, 32241833 - 32241719
Alignment:
| Q |
362 |
atgctatgatgcgaacaaacctaatcacaagaaatttgattgattaattaaataaattaagtagaattactgaatgattagagtttgattgatgaagaac |
461 |
Q |
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||||||||| | ||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||||||||||||| || ||||| ||||| || |
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| T |
32241833 |
atgctatgaatcaaacaaacctaatcacaagaaattggatt----aattaaacaaattaacaataattactgaatgattagtgtgtgattaatgaaaaag |
32241738 |
T |
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| Q |
462 |
ttacagagaatcagagtaa |
480 |
Q |
| |
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||| |||||| | |||||| |
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| T |
32241737 |
ttagagagaaccggagtaa |
32241719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 292
Target Start/End: Original strand, 32238122 - 32238230
Alignment:
| Q |
184 |
tcaagaatagagatttgcttaacagcaacgattcgtttagtttcgacgtcgcagcaacggaaaactgtaccgaaaccaccttcaccaagcttctcaagaa |
283 |
Q |
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|||||| ||||||||||||| ||||| || |||| |||| ||||||||| | |||| |||||| ||| |||| | |||||| ||||| ||||||||| |
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| T |
32238122 |
tcaagagtagagatttgcttgacagccacaattcaattagcttcgacgtcacggcaagacaaaactctactgaaatctccttcatcaagcatctcaagaa |
32238221 |
T |
|
| Q |
284 |
actccatat |
292 |
Q |
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||||||||| |
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| T |
32238222 |
actccatat |
32238230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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