View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_40 (Length: 401)
Name: NF1643_low_40
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 1217455 - 1217838
Alignment:
| Q |
1 |
aaataaaaattgtcgtatcatctgaatcgaacagtaaataatgggcgactacaatagtgtgtgactcgagatctaatcttctaggtgaaatttggaaaat |
100 |
Q |
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| T |
1217455 |
aaatacaaattgtctgatcatcttcatctaacagtcaatgatgggcgactacaacattttgtaactcgagatctaatcttctatgtgaaatttggaaaat |
1217554 |
T |
|
| Q |
101 |
gaatttgatgggatcatgcatttatgcagttgataatctaagcggttgatccttattggacatatatatttatcaaacttataatgtaaagtgtctgatc |
200 |
Q |
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|||||| ||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1217555 |
gaatttcatgcggtcatgcatttatgcagttgataatctaaacggttgatccttattggacatatatatttatcaaatttataatgtaaagtgtctgatc |
1217654 |
T |
|
| Q |
201 |
ttgatccaacgactttgaggtgtcaactatttgactgcatgattgtctaagtgtaagagtgggtcatgggacaaggaaagttgtgacatttgaagggtag |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1217655 |
ttgatccaacgactctgaggtgtcaactatttgactgcatgattatctaagtgtaagagtgggtcatgggacaaggaaagttgtgacatttgaagggtag |
1217754 |
T |
|
| Q |
301 |
ttgagtcctattcattgatatctaagagggattaagaaaggccaataagatgatgtaaaaatccaaagtctctaaaacccactt |
384 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1217755 |
ttgagtcttattcattgatatctaagagggcttaagaaaggccaataagatgatgtaaaaatccaaagtctctaaaacccactt |
1217838 |
T |
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