View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_low_41 (Length: 397)

Name: NF1643_low_41
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_low_41
NF1643_low_41
[»] chr7 (1 HSPs)
chr7 (15-388)||(12417480-12417853)
[»] chr8 (2 HSPs)
chr8 (227-291)||(13223967-13224031)
chr8 (325-358)||(30213771-30213804)
[»] scaffold0032 (1 HSPs)
scaffold0032 (325-358)||(78775-78808)
[»] chr4 (4 HSPs)
chr4 (325-358)||(18445336-18445369)
chr4 (325-360)||(19052738-19052773)
chr4 (325-360)||(22223463-22223498)
chr4 (315-360)||(39981249-39981294)
[»] chr1 (2 HSPs)
chr1 (315-360)||(12439926-12439971)
chr1 (325-360)||(12397235-12397270)
[»] chr2 (2 HSPs)
chr2 (313-353)||(14794468-14794508)
chr2 (325-360)||(8685016-8685051)
[»] chr5 (3 HSPs)
chr5 (325-360)||(22747821-22747856)
chr5 (315-360)||(32452513-32452558)
chr5 (327-359)||(22820785-22820817)
[»] chr6 (2 HSPs)
chr6 (325-358)||(20395346-20395379)
chr6 (320-360)||(28952698-28952738)
[»] chr3 (1 HSPs)
chr3 (324-360)||(20747321-20747357)


Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 15 - 388
Target Start/End: Original strand, 12417480 - 12417853
Alignment:
Q  15 catttaacaccttacaaagtgcctatgtacctttctcatttttatgaattagcttatgattcctcactcatatcaacaatttcaaaattgttctccaata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12417480 catttaacaccttacaaagtgcctatgtacctttctcatttttatgaattagcttatgattcgtcactcatatcaacaatttcaaaattgttctccaata 12417579  T
Q  115 caacattcacctcgataaattttttaagaagatcataatgcaagaaaaaataagttactgtaagacttataagtaaatattgggcgtggggggaagcttt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12417580 caacattcacctcgataaattttttaagaagatcataatgcaagaaaaaataagttactgtaagacttataagtaaatattgggcgtggggggaagcttt 12417679  T
Q  215 ttgtggctttacttttctttagtttaacatcctaatcagaatctaagatattcagattctgatgtagagtctgagtgcagcacattaagtacaaaacaca 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12417680 ttgtggctttacttttctttagtttaacatcctaatcagaatctaagatattcagattctgatgtagagtctgagtgcagcacattaagtacaaaacaca 12417779  T
Q  315 acaattcagaagtagtccagtcctcttgcacttccaagggatttcaagtatatatacataacagatagtataat 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12417780 acaattcagaagtagtccagtcctcttgcacttccaagggatttcaagtatatatacataacagatagtataat 12417853  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 13224031 - 13223967
Alignment:
Q  227 ttttctttagtttaacatcctaatcagaatctaagatattcagattctgatgtagagtctgagtg 291  Q
    |||||||| ||| |||| ||| ||||||||||||||||| || ||||||||||||||||||||||    
T  13224031 ttttctttggttgaacagcctgatcagaatctaagatatacatattctgatgtagagtctgagtg 13223967  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 30213771 - 30213804
Alignment:
Q  325 agtagtccagtcctcttgcacttccaagggattt 358  Q
    ||||||||||||| ||||||||||||||||||||    
T  30213771 agtagtccagtccccttgcacttccaagggattt 30213804  T

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Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 78775 - 78808
Alignment:
Q  325 agtagtccagtcctcttgcacttccaagggattt 358  Q
    ||||||||||||||||||||||||||||||||||    
T  78775 agtagtccagtcctcttgcacttccaagggattt 78808  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 18445336 - 18445369
Alignment:
Q  325 agtagtccagtcctcttgcacttccaagggattt 358  Q
    ||||||||||||||||||||||||||||||||||    
T  18445336 agtagtccagtcctcttgcacttccaagggattt 18445369  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 360
Target Start/End: Original strand, 19052738 - 19052773
Alignment:
Q  325 agtagtccagtcctcttgcacttccaagggatttca 360  Q
    ||||||||||||| ||||||||||||||||||||||    
T  19052738 agtagtccagtccccttgcacttccaagggatttca 19052773  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 360
Target Start/End: Complemental strand, 22223498 - 22223463
Alignment:
Q  325 agtagtccagtcctcttgcacttccaagggatttca 360  Q
    ||||||| ||||||||||||||||||||||||||||    
T  22223498 agtagtcaagtcctcttgcacttccaagggatttca 22223463  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 360
Target Start/End: Complemental strand, 39981294 - 39981249
Alignment:
Q  315 acaattcagaagtagtccagtcctcttgcacttccaagggatttca 360  Q
    ||||| ||| ||||||||||||| ||||||||||||||| ||||||    
T  39981294 acaatccaggagtagtccagtccacttgcacttccaaggaatttca 39981249  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 360
Target Start/End: Complemental strand, 12439971 - 12439926
Alignment:
Q  315 acaattcagaagtagtccagtcctcttgcacttccaagggatttca 360  Q
    ||||||||| |||| |||| ||||||||||||||||||||||||||    
T  12439971 acaattcaggagtactccaatcctcttgcacttccaagggatttca 12439926  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 360
Target Start/End: Original strand, 12397235 - 12397270
Alignment:
Q  325 agtagtccagtcctcttgcacttccaagggatttca 360  Q
    ||||||||||||| ||||||||||||||||||||||    
T  12397235 agtagtccagtccccttgcacttccaagggatttca 12397270  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 14794508 - 14794468
Alignment:
Q  313 caacaattcagaagtagtccagtcctcttgcacttccaagg 353  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  14794508 caacaattcggaagtagtccagtccccttgcacttccaagg 14794468  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 360
Target Start/End: Original strand, 8685016 - 8685051
Alignment:
Q  325 agtagtccagtcctcttgcacttccaagggatttca 360  Q
    ||||||||||||| ||||||||||||||||||||||    
T  8685016 agtagtccagtccccttgcacttccaagggatttca 8685051  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 360
Target Start/End: Original strand, 22747821 - 22747856
Alignment:
Q  325 agtagtccagtcctcttgcacttccaagggatttca 360  Q
    ||||||||||||| ||||||||||||||||||||||    
T  22747821 agtagtccagtccccttgcacttccaagggatttca 22747856  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 360
Target Start/End: Complemental strand, 32452558 - 32452513
Alignment:
Q  315 acaattcagaagtagtccagtcctcttgcacttccaagggatttca 360  Q
    ||||| ||||||||||||||||| ||| ||||| ||||||||||||    
T  32452558 acaatccagaagtagtccagtccccttacactttcaagggatttca 32452513  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 22820785 - 22820817
Alignment:
Q  327 tagtccagtcctcttgcacttccaagggatttc 359  Q
    |||||||||||||||||||||||||| ||||||    
T  22820785 tagtccagtcctcttgcacttccaagagatttc 22820817  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 20395346 - 20395379
Alignment:
Q  325 agtagtccagtcctcttgcacttccaagggattt 358  Q
    |||||||||||||||||||||||| |||||||||    
T  20395346 agtagtccagtcctcttgcacttctaagggattt 20395379  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 28952738 - 28952698
Alignment:
Q  320 tcagaagtagtccagtcctcttgcacttccaagggatttca 360  Q
    |||| |||||||||||||||||||||||| |||| ||||||    
T  28952738 tcaggagtagtccagtcctcttgcacttctaaggaatttca 28952698  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 20747357 - 20747321
Alignment:
Q  324 aagtagtccagtcctcttgcacttccaagggatttca 360  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  20747357 aagtagtccagtccccttgcactttcaagggatttca 20747321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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