View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_low_44 (Length: 389)

Name: NF1643_low_44
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_low_44
NF1643_low_44
[»] chr1 (21 HSPs)
chr1 (1-365)||(19278842-19279206)
chr1 (1-365)||(13244192-13244559)
chr1 (29-365)||(13271740-13272082)
chr1 (24-337)||(13080562-13080875)
chr1 (71-365)||(13086261-13086555)
chr1 (1-196)||(12963585-12963780)
chr1 (249-365)||(12963797-12963913)
chr1 (105-365)||(13007354-13007611)
chr1 (22-208)||(19727461-19727647)
chr1 (118-365)||(13161675-13161919)
chr1 (255-365)||(13204613-13204723)
chr1 (111-366)||(13094552-13094804)
chr1 (21-193)||(13214142-13214314)
chr1 (58-319)||(13064947-13065205)
chr1 (105-199)||(30367889-30367983)
chr1 (118-366)||(13129981-13130226)
chr1 (255-365)||(13070104-13070214)
chr1 (255-325)||(13101194-13101264)
chr1 (64-193)||(13069916-13070045)
chr1 (22-209)||(13101307-13101494)
chr1 (122-209)||(13204766-13204853)
[»] chr6 (1 HSPs)
chr6 (105-196)||(31396456-31396548)
[»] chr8 (1 HSPs)
chr8 (276-313)||(36668331-36668368)


Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 19278842 - 19279206
Alignment:
Q  1 atgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagacgtatattagagacactgctctcaatctctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19278842 atgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagatgtatattagagacactgctctcaatctctt 19278941  T
Q  101 ggctgcaggtaatggaacaattagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatcaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19278942 ggctgcaggtaatggaacaattagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatcaag 19279041  T
Q  201 gttaactgtttaacaaaagaggataattcgatcacaaatttcagtgtgaaagagcttgataagctagtttaccttcatggagctatatttgaagccttaa 300  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  19279042 gttaactgtttaacaaaagaggataatttgatcacaaattttagtgtgaaagagcttgataagctagtttatcttcatggagctatatgtgaagccttaa 19279141  T
Q  301 ggctttatccacctgtaccatttgaacacaagtgtgcagttaattccgatacactacctagtgga 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19279142 ggctttatccacctgtaccatttgaacacaagtgtgcagttaattccgatatactacctagtgga 19279206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 13244192 - 13244559
Alignment:
Q  1 atgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaagggcgaaacga---atgagacgtatattagagacactgctctcaatct 97  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||| ||   |||||| |||||| |||||||||||  | |||||    
T  13244192 atgaatctcgttattgcctgctaaaagaactaatgaaggaaagattgggaaagggggaaatgatcgatgagaagtatatcagagacactgcggtaaatct 13244291  T
Q  98 cttggctgcaggtaatggaacaattagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatc 197  Q
    ||| | |||||| ||||||||||||||||| ||||| | ||||||||||||||| || ||||||||||||||||  ||||| ||||||||||||||||||    
T  13244292 cttcggtgcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattggggaagcgaaaattattcaagagatc 13244391  T
Q  198 aaggttaactgtttaacaaaagaggataattcgatcacaaatttcagtgtgaaagagcttgataagctagtttaccttcatggagctatatttgaagcct 297  Q
    || | ||| ||| ||||| ||||||| ||||  ||||  ||||| |  ||| || || |||||||||| ||||||||||||||||| |||| |||| |||    
T  13244392 aaagataattgtctaacacaagaggagaatttaatcaataatttaaacgtggaaaagattgataagcttgtttaccttcatggagccatatgtgaaacct 13244491  T
Q  298 taaggctttatccacctgtaccatttgaacacaagtgtgcagttaattccgatacactacctagtgga 365  Q
    | ||||| ||||| ||| |  ||||| | |||||||| ||  | || || |||| |||||||||||||    
T  13244492 tgaggctatatcctcctctggcatttcagcacaagtgcgctatcaaatctgatatactacctagtgga 13244559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 29 - 365
Target Start/End: Complemental strand, 13272082 - 13271740
Alignment:
Q  29 actaatgaaggaaagattgggaaagggcgaaacgaatgagac------gtatattagagacactgctctcaatctcttggctgcaggtaatggaacaatt 122  Q
    ||||||||||||| | ||||||||||  ||||||||||| |       ||||||||||||||||||  ||| ||||||||||||||| ||||||||| ||    
T  13272082 actaatgaaggaaggcttgggaaaggaagaaacgaatgaaaatgaaaagtatattagagacactgcattcactctcttggctgcaggaaatggaacagtt 13271983  T
Q  123 agttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatcaaggttaactgtttaacaaaagagg 222  Q
    ||||| ||||| | ||||||||||||||| || ||||||||||||| ||| ||||||||| |||||||||||||||| | | | ||| ||||| ||||||    
T  13271982 agttcaggtctaagttggttcttttggcttgtttcaactcatcctaatgtggaagcaaaacttattcaagagatcaaagatcattgtctaacacaagagg 13271883  T
Q  223 ataattcgatcacaaatttcagtgtgaaagagcttgataagctagtttaccttcatggagctatatttgaagccttaaggctttatccacctgtaccatt 322  Q
    | |||| |||||  ||||| | |||  || |  ||||||||||  |||||||||||| |||||||| |||| |||| || |||||||| ||| |||||||    
T  13271882 agaatttgatcaataatttaaatgttgaaaacattgataagctgatttaccttcatgcagctatatgtgaaaccttgagactttatcctcctataccatt 13271783  T
Q  323 tgaacacaagtgtgcagttaattccgatacactacctagtgga 365  Q
    ||| |||||||||||||||||||| |||| |||||||||||||    
T  13271782 tgatcacaagtgtgcagttaattctgatatactacctagtgga 13271740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 24 - 337
Target Start/End: Original strand, 13080562 - 13080875
Alignment:
Q  24 aaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagacgtatattagagacactgctctcaatctcttggctgcaggtaatggaacaatta 123  Q
    ||||| |||||| ||||| |||||| |||||| |||| |  ||||| |||||||||||| ||| |  |||||||||||| |||||| |||||||||||||    
T  13080562 aaagatctaatggaggaaggattggaaaagggggaaatggttgagaggtatattagagatactacaatcaatctcttggttgcaggaaatggaacaatta 13080661  T
Q  124 gttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatcaaggttaactgtttaacaaaagagga 223  Q
    || | ||||||| |||||| |||||||| || ||||| |||||||  || || |  |||||||||||||||||||| | ||| ||||||| | | || ||    
T  13080662 gtacaggtctcacttggtttttttggctggtttcaacgcatcctagggtagatggtaaaattattcaagagatcaaagataattgtttaaaacacgatga 13080761  T
Q  224 taattcgatcacaaatttcagtgtgaaagagcttgataagctagtttaccttcatggagctatatttgaagccttaaggctttatccacctgtaccattt 323  Q
     ||||  ||| | |||||  ||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||  ||||| |||||    
T  13080762 gaattttatcgctaatttaggtgtggaagagcttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatccttctgtagcattt 13080861  T
Q  324 gaacacaagtgtgc 337  Q
     | |||||||||||    
T  13080862 cagcacaagtgtgc 13080875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 71 - 365
Target Start/End: Complemental strand, 13086555 - 13086261
Alignment:
Q  71 gtatattagagacactgctctcaatctcttggctgcaggtaatggaacaattagttcgggtctcaattggttcttttggctcgtatcaactcatcctatt 170  Q
    ||||||||||||||||||  |||||||||| |||||||| | ||||||| ||||||| ||||| | |||||||| |||||| || |||||||||   ||     
T  13086555 gtatattagagacactgcattcaatctcttagctgcaggaagtggaacagttagttcaggtctaagttggttctcttggcttgtttcaactcatttcata 13086456  T
Q  171 gtcgaagcaaaaattattcaagagatcaaggttaactgtttaacaaaagaggataattcgatcacaaatttcagtgtgaaagagcttgataagctagttt 270  Q
    || ||||| ||||| ||||||||||| || | ||| ||| || || | |||||||||| | |||| ||||| || ||  || ||||| |||| ||||| |    
T  13086455 gtggaagctaaaataattcaagagataaaagataattgtctatcacatgaggataatttggtcactaatttaagagttgaaaagcttaataaactagtgt 13086356  T
Q  271 accttcatggagctatatttgaagccttaaggctttatccacctgtaccatttgaacacaagtgtgcagttaattccgatacactacctagtgga 365  Q
    |||||||||||||||||| |||||| || ||||||||||| |||||||||||| | |||||||||||| | ||  | |||| |||||||||||||    
T  13086355 accttcatggagctatatgtgaagcattgaggctttatcctcctgtaccatttcagcacaagtgtgcaatcaaagctgatatactacctagtgga 13086261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 12963585 - 12963780
Alignment:
Q  1 atgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagacgtatattagagacactgctctcaatctctt 100  Q
    |||||||||||| ||||||| ||||||| |||||||||||| ||||||||||||| |||| |  |||||  ||||||| | ||||  | |||||||||||    
T  12963585 atgaatctcattcttgcctgctaaaagatctaatgaaggaaggattgggaaagggggaaatggctgagaaatatattataaacacaacactcaatctctt 12963684  T
Q  101 ggctgcaggtaatggaacaattagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagat 196  Q
     |||||||| | ||||||| ||||||| ||||| | ||||||||||||||| || ||||||||||||||||| ||| | |||||||||||||||||    
T  12963685 agctgcaggaagtggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaaactaaaattattcaagagat 12963780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 249 - 365
Target Start/End: Original strand, 12963797 - 12963913
Alignment:
Q  249 aaagagcttgataagctagtttaccttcatggagctatatttgaagccttaaggctttatccacctgtaccatttgaacacaagtgtgcagttaattccg 348  Q
    |||| |||||||||||| ||||| |||||||||||||| | |||||| |||||||||||||| ||| ||||||||||||||||||||||| |||| || |    
T  12963797 aaagggcttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcctataccatttgaacacaagtgtgcaattaaatcag 12963896  T
Q  349 atacactacctagtgga 365  Q
    ||| | |||||||||||    
T  12963897 atatattacctagtgga 12963913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 105 - 365
Target Start/End: Complemental strand, 13007611 - 13007354
Alignment:
Q  105 gcaggtaatggaacaattagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatcaaggtta 204  Q
    ||||| ||||| ||||||||||| ||||||| |||||| || ||||| || ||||||||||||||||| ||||| |||||||||||||| ||||| | ||    
T  13007611 gcaggaaatggcacaattagttcaggtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagaaatcaaagata 13007512  T
Q  205 actgtttaacaaaagaggataattcgatcacaaatttcagtgtgaaagagcttgataagctagtttaccttcatggagctatatttgaagccttaaggct 304  Q
    ||||    ||| ||||||| |||  |   ||   ||| || |     || |||||||||||||| ||||| ||||||||| ||| ||||||| | |||||    
T  13007511 actggcccacacaagaggagaatcag---actcctttgagagatgtggatcttgataagctagtgtacctccatggagctctatgtgaagccatgaggct 13007415  T
Q  305 ttatccacctgtaccatttgaacacaagtgtgcagttaattccgatacactacctagtgga 365  Q
    |||||| |||||||| ||||| || |  |||||| | |||||||||| |||||||||||||    
T  13007414 ttatcctcctgtaccttttgagcatatctgtgcaatcaattccgatatactacctagtgga 13007354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 22 - 208
Target Start/End: Complemental strand, 19727647 - 19727461
Alignment:
Q  22 taaaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagacgtatattagagacactgctctcaatctcttggctgcaggtaatggaacaat 121  Q
    |||||| ||||||||||||| |||  |||||||| |||| |||||||| |||| ||||||||| |   |||| ||||||    ||||| |||||  || |    
T  19727647 taaaagcactaatgaaggaaggatctggaaagggggaaatgaatgagaagtatcttagagacaatttactcactctctttttagcaggaaatggcccagt 19727548  T
Q  122 tagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatcaaggttaactg 208  Q
    |||| | ||||||| |||||| |||||||| || || |||||||||||||||||||| |||||||||||||| ||||| | ||||||    
T  19727547 tagtacaggtctcagttggtttttttggcttgtttcgactcatcctattgtcgaagccaaaattattcaagaaatcaaagataactg 19727461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 118 - 365
Target Start/End: Complemental strand, 13161919 - 13161675
Alignment:
Q  118 caattagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatcaaggttaactgtttaacaaa 217  Q
    |||||||||| | ||||| |||||| || |||||| | |||||| |||||||||| |||| |||||| |||||||||||||| | ||| ||  ||||| |    
T  13161919 caattagttcagctctcagttggtttttctggctcctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggctaacaca 13161820  T
Q  218 agaggataattcgatcacaaatttcagtgtgaaagagcttgataagctagtttaccttcatggagctatatttgaagccttaaggctttatccacctgta 317  Q
    ||||||||||  ||| |    ||| || |     |  |||||||||||||| ||||| ||||||||||||| |||| |||||||||||||||||||| ||    
T  13161819 agaggataatcggattat---tttgagggatgtggttcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatccacctata 13161723  T
Q  318 ccatttgaacacaagtgtgcagttaattccgatacactacctagtgga 365  Q
    || ||||| || |  |||||| | || ||||||| |||||||||||||    
T  13161722 ccttttgagcatatctgtgcaatcaaatccgatatactacctagtgga 13161675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 255 - 365
Target Start/End: Complemental strand, 13204723 - 13204613
Alignment:
Q  255 cttgataagctagtttaccttcatggagctatatttgaagccttaaggctttatccacctgtaccatttgaacacaagtgtgcagttaattccgatacac 354  Q
    |||||||||||||| ||||||||||||||||||| ||||||||| || |||||||| |||||||| ||||| || |  |||||| | || ||||||| ||    
T  13204723 cttgataagctagtgtaccttcatggagctatatgtgaagccttgagactttatcctcctgtaccttttgagcatatatgtgcaatcaaatccgatatac 13204624  T
Q  355 tacctagtgga 365  Q
    |||||||||||    
T  13204623 tacctagtgga 13204613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 111 - 366
Target Start/End: Complemental strand, 13094804 - 13094552
Alignment:
Q  111 aatggaacaattagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatcaaggttaactgtt 210  Q
    ||||| ||||||||||| | ||||| |||||| || |||||  | |||||| |||||||||| |||| |||||| |||||||||||||  | ||| || |    
T  13094804 aatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcagagataattggt 13094705  T
Q  211 taacaaaagaggataattcgatcacaaatttcagtgtgaaagagcttgataagctagtttaccttcatggagctatatttgaagccttaaggctttatcc 310  Q
    |||||  ||||||| ||  ||| ||   ||| || |     || |||||||||||||| ||||| ||||||||||||| |||| ||||||||||||||||    
T  13094704 taacacgagaggattatcggattac---tttgagggatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcc 13094608  T
Q  311 acctgtaccatttgaacacaagtgtgcagttaattccgatacactacctagtggat 366  Q
     |||||||| ||||| || |  |||||| | || || |||| ||||||||||||||    
T  13094607 tcctgtaccttttgagcatatctgtgcaatcaaatctgatatactacctagtggat 13094552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 13214314 - 13214142
Alignment:
Q  21 gtaaaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagacgtatattagagacactgctctcaatctcttggctgcaggtaatggaacaa 120  Q
    ||||||| ||||||||||||| |||| |||||||| |||| | |||||| |||| ||||||||| |||  ||| ||||||    ||||| |||||  ||     
T  13214314 gtaaaagcactaatgaaggaaggatttggaaagggggaaatggatgagaagtatcttagagacaatgcgatcactctctttttagcaggaaatggcccag 13214215  T
Q  121 ttagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaaga 193  Q
    || |||| ||||||| |||||| || ||||| || |||||||||| |||||| ||||| ||||||||||||||    
T  13214214 ttcgttcaggtctcatttggtttttctggcttgtttcaactcatcttattgtggaagctaaaattattcaaga 13214142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 58 - 319
Target Start/End: Original strand, 13064947 - 13065205
Alignment:
Q  58 aaacgaatgagacgtatattagagacactgctctcaatctcttggctgcaggtaatggaacaattagttcgggtctcaattggttcttttggctcgtatc 157  Q
    |||||| ||||| |||| |||||||||||||  ||||||| |||   || || || || ||| ||||||| ||||||| ||||||||||||||| || ||    
T  13064947 aaacgagtgagaagtatcttagagacactgcagtcaatctattgttagcgggaaacggcacagttagttcaggtctcagttggttcttttggcttgtttc 13065046  T
Q  158 aactcatcctattgtcgaagcaaaaattattcaagagatcaaggttaactgtttaacaaaagaggataattcgatcacaaatttcagtgtgaaagagctt 257  Q
    |  ||||||| |||| ||||| || |||||||||||||| || | ||| ||| || |  | || || || | ||| ||   ||  | |||| || |||||    
T  13065047 atgtcatcctgttgtggaagccaagattattcaagagatgaaagataattgtctatctgatgatgaaaacttgattac---ttcaattgtggaaaagctt 13065143  T
Q  258 gataagctagtttaccttcatggagctatatttgaagccttaaggctttatccacctgtacc 319  Q
    ||||| ||| ||||||| || |||||||||| ||||||||||||||||||||| ||||||||    
T  13065144 gataaactaatttacctccacggagctatatgtgaagccttaaggctttatcctcctgtacc 13065205  T

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Target: chr1; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 30367889 - 30367983
Alignment:
Q  105 gcaggtaatggaacaattagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatcaa 199  Q
    ||||||||||| ||| |||||||  |||||| |||||| || ||||| || ||||||||||||||||| ||||| ||||||||||||||||||||    
T  30367889 gcaggtaatggcacacttagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaa 30367983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 118 - 366
Target Start/End: Complemental strand, 13130226 - 13129981
Alignment:
Q  118 caattagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatcaaggttaactgtttaacaaa 217  Q
    |||||||||| | ||||| |||||| || |||||  | |||||| |||||||||| |||| |||||| |||||||||||||| | ||| || |||||| |    
T  13130226 caattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacaca 13130127  T
Q  218 agaggataattcgatcacaaatttcag---tgtgaaagagcttgataagctagtttaccttcatggagctatatttgaagccttaaggctttatccacct 314  Q
    ||||| ||||  ||| ||   ||| ||   ||||   || |||||||||||||| ||||| ||||||||||||| |||| |||||||||||||||| |||    
T  13130126 agagggtaatcggattac---tttgaggcatgtg---gatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcct 13130033  T
Q  315 gtaccatttgaacacaagtgtgcagttaattccgatacactacctagtggat 366  Q
     |||| ||||| || |  ||| || | || || |||| ||||||||||||||    
T  13130032 ataccttttgagcatatctgttcaatcaaatctgatatactacctagtggat 13129981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 365
Target Start/End: Original strand, 13070104 - 13070214
Alignment:
Q  255 cttgataagctagtttaccttcatggagctatatttgaagccttaaggctttatccacctgtaccatttgaacacaagtgtgcagttaattccgatacac 354  Q
    |||||||| ||||| ||||||||||||||||||| |||| |||| || |||||||| |||||||| ||||| || |  |||||| | || ||||||| ||    
T  13070104 cttgataatctagtgtaccttcatggagctatatgtgaaaccttgagactttatcctcctgtaccttttgagcatatatgtgcaatcaaatccgatatac 13070203  T
Q  355 tacctagtgga 365  Q
    |||||||||||    
T  13070204 tacctagtgga 13070214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 325
Target Start/End: Complemental strand, 13101264 - 13101194
Alignment:
Q  255 cttgataagctagtttaccttcatggagctatatttgaagccttaaggctttatccacctgtaccatttga 325  Q
    |||||||||||||| ||||| ||||||||||||| |||| |||| ||||||||||| |||||||| |||||    
T  13101264 cttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcctgtaccttttga 13101194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 13069916 - 13070045
Alignment:
Q  64 atgagacgtatattagagacactgctctcaatctcttggctgcaggtaatggaacaattagttcgggtctcaattggttcttttggctcgtatcaactca 163  Q
    |||||| |||| ||||||||| ||| |||  ||||||    ||||| ||||| ||| ||| ||| ||||||| |||||| || ||||| || ||||||||    
T  13069916 atgagaagtatcttagagacaatgcactctctctctttttagcaggaaatggcacagttacttcaggtctcagttggtttttctggcttgtttcaactca 13070015  T
Q  164 tcctattgtcgaagcaaaaattattcaaga 193  Q
    ||||||||| ||||| ||||||||||||||    
T  13070016 tcctattgtggaagccaaaattattcaaga 13070045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 13101494 - 13101307
Alignment:
Q  22 taaaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagacgtatattagagacactgctctcaatctcttggctgcaggtaatggaacaat 121  Q
    |||||| ||||| ||||||| |||  |||||||| |||| | |||||| |||| ||||||||| ||   ||| ||||||    ||||| |||||  || |    
T  13101494 taaaagcactaacgaaggaaggatctggaaagggggaaatggatgagaagtatcttagagacaatgtaatcactctctttttagcaggaaatggcccagt 13101395  T
Q  122 tagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatcaaggttaactgt 209  Q
    |||||| | ||||| |||||| || ||||| || || |||||||||||||| ||||| ||||| |||||||| ||||| | |||||||    
T  13101394 tagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgt 13101307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 13204853 - 13204766
Alignment:
Q  122 tagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatcaaggttaactgt 209  Q
    |||||| ||||| | |||||| |||||||| || || |||||||||||||| ||||| ||||| |||||||| ||||| | |||||||    
T  13204853 tagttcaggtctaagttggtttttttggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgt 13204766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 31396456 - 31396548
Alignment:
Q  105 gcaggtaatggaacaattagttcgggtctcaattggttcttttggctcgtat-caactcatcctattgtcgaagcaaaaattattcaagagat 196  Q
    ||||| ||||| |||||||||||  |||||  |||||| || ||||| || | |||||||||||| ||| ||||| |||||||||||||||||    
T  31396456 gcaggaaatggcacaattagttcaagtctcggttggtttttctggcttgttttcaactcatcctaatgtggaagccaaaattattcaagagat 31396548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 36668368 - 36668331
Alignment:
Q  276 catggagctatatttgaagccttaaggctttatccacc 313  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  36668368 catggagctttatgtgaagccttaaggctttatccacc 36668331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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