View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_low_45 (Length: 389)

Name: NF1643_low_45
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_low_45
NF1643_low_45
[»] chr2 (2 HSPs)
chr2 (2-374)||(19105256-19105627)
chr2 (7-55)||(4427523-4427571)
[»] chr3 (1 HSPs)
chr3 (20-57)||(44252358-44252395)
[»] chr7 (2 HSPs)
chr7 (20-60)||(2632401-2632441)
chr7 (26-58)||(30999561-30999593)
[»] scaffold0013 (2 HSPs)
scaffold0013 (6-56)||(128527-128577)
scaffold0013 (20-56)||(105934-105970)
[»] chr8 (2 HSPs)
chr8 (20-58)||(40248776-40248814)
chr8 (1-57)||(34301569-34301625)
[»] chr6 (3 HSPs)
chr6 (1-55)||(10188489-10188543)
chr6 (20-56)||(12141015-12141051)
chr6 (17-57)||(15498275-15498315)
[»] chr1 (1 HSPs)
chr1 (20-57)||(42440069-42440106)
[»] scaffold0059 (1 HSPs)
scaffold0059 (20-56)||(69682-69718)
[»] chr5 (1 HSPs)
chr5 (6-58)||(15889827-15889879)
[»] chr4 (1 HSPs)
chr4 (20-56)||(21544180-21544216)


Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 2 - 374
Target Start/End: Original strand, 19105256 - 19105627
Alignment:
Q  2 tatagggatagggaagtaaaaactcgtccccaccctgccacattgccatgcctactcaagaagaataaaaatgcaaaacgacagtggtttctacataaac 101  Q
    |||| ||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19105256 tataaggacagggaagtaaaa-ctcgtccccaccctgccacattgccatgtctactcaagaagaataaaaatgcaaaacgacaatggtttctacataaac 19105354  T
Q  102 cgttggatggtaaaaaacggataggcagagaaaaaggctccccgacagcgacgctatagggagtagtttagttttgtgaaacatcaaagtgttacaaaaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19105355 cgttggatggtaaaaaacggataggcagagaaaaaggctccccgacagcgacgttatagggagtagtttagttttgtgaaacatcaaagtgttacaaaaa 19105454  T
Q  202 cgaaacaatagaaaaaacacaagtcctatttttgttgcgataattgtgcgtataaagttaaaacacaaacgttgtttttggggttttgattacaagaaaa 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  19105455 cgaaacaatagaaaaaacacaagtcctatttttgttgcgataattgtgcgtataaagttaaaacacaaacgttgtttttgggtttttgattacgagaaaa 19105554  T
Q  302 ggcttaaaacaaacaaactaaaaaacgttgttttttaatctctctcaggagagctcgctagctctggttggtt 374  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19105555 ggcttaaaacaaacaaactaataaacgttgttttttaatctctctcaggagagctcgctagctctggttggtt 19105627  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 4427571 - 4427523
Alignment:
Q  7 ggatagggaagtaaaaactcgtccccaccctgccacattgccatgccta 55  Q
    |||| ||||||  ||||||||||||||||||||| ||||||||||||||    
T  4427571 ggatggggaaggcaaaactcgtccccaccctgccccattgccatgccta 4427523  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 44252395 - 44252358
Alignment:
Q  20 aaaactcgtccccaccctgccacattgccatgcctact 57  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  44252395 aaaactcgtccccaccctgccccattgccatgcctact 44252358  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 2632401 - 2632441
Alignment:
Q  20 aaaactcgtccccaccctgccacattgccatgcctactcaa 60  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  2632401 aaaacccgtccccaccctgccccattgccatgcctactcaa 2632441  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 30999593 - 30999561
Alignment:
Q  26 cgtccccaccctgccacattgccatgcctactc 58  Q
    |||||||||||||||||||||||||| ||||||    
T  30999593 cgtccccaccctgccacattgccatgtctactc 30999561  T

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Target: scaffold0013 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 128527 - 128577
Alignment:
Q  6 gggatagggaagtaaaaactcgtccccaccctgccacattgccatgcctac 56  Q
    ||||| ||||||  ||||||||||||||||| ||| |||||||||||||||    
T  128527 gggatggggaaggcaaaactcgtccccaccccgccccattgccatgcctac 128577  T

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Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 105934 - 105970
Alignment:
Q  20 aaaactcgtccccaccctgccacattgccatgcctac 56  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  105934 aaaactcgtccccaccccgccccattgccatgcctac 105970  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 40248776 - 40248814
Alignment:
Q  20 aaaactcgtccccaccctgccacattgccatgcctactc 58  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  40248776 aaaacccgtccccaccctgccccattgccatgcctactc 40248814  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 34301569 - 34301625
Alignment:
Q  1 gtatagggatagggaagtaaaaactcgtccccaccctgccacattgccatgcctact 57  Q
    |||| ||||| ||||||  ||||| ||||||||||| ||| ||||||||||||||||    
T  34301569 gtatggggatggggaaggtaaaacccgtccccaccccgccccattgccatgcctact 34301625  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10188489 - 10188543
Alignment:
Q  1 gtatagggatagggaagtaaaaactcgtccccaccctgccacattgccatgccta 55  Q
    |||| ||||| ||||||  ||||||||||||||||| ||| ||||||||||||||    
T  10188489 gtatggggatggggaaggtaaaactcgtccccaccccgccccattgccatgccta 10188543  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 12141051 - 12141015
Alignment:
Q  20 aaaactcgtccccaccctgccacattgccatgcctac 56  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  12141051 aaaactcgtccccaccccgccccattgccatgcctac 12141015  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 15498315 - 15498275
Alignment:
Q  17 gtaaaaactcgtccccaccctgccacattgccatgcctact 57  Q
    ||||||||||||| |||||| ||| ||||||||||||||||    
T  15498315 gtaaaaactcgtctccaccccgccccattgccatgcctact 15498275  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 42440069 - 42440106
Alignment:
Q  20 aaaactcgtccccaccctgccacattgccatgcctact 57  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  42440069 aaaactcgtccacaccctgccccattgccatgcctact 42440106  T

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Target: scaffold0059 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 69718 - 69682
Alignment:
Q  20 aaaactcgtccccaccctgccacattgccatgcctac 56  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  69718 aaaactcgtccccaccccgccccattgccatgcctac 69682  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 15889879 - 15889827
Alignment:
Q  6 gggatagggaagtaaaaactcgtccccaccctgccacattgccatgcctactc 58  Q
    ||||| ||||||  ||||| ||||||||||| ||| |||||||||||||||||    
T  15889879 gggatggggaaggtaaaacccgtccccaccccgccccattgccatgcctactc 15889827  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 21544216 - 21544180
Alignment:
Q  20 aaaactcgtccccaccctgccacattgccatgcctac 56  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  21544216 aaaacccgtccccaccctgccccattgccatgcctac 21544180  T

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