View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_46 (Length: 388)
Name: NF1643_low_46
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 27 - 372
Target Start/End: Complemental strand, 4508484 - 4508143
Alignment:
| Q |
27 |
gattttattgaataatactaacaagtgtctttgaaattttgttttaattagaaaagttcaatttcttaaaagttcaaaattcattttttaatagaaaatt |
126 |
Q |
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| T |
4508484 |
gattttattgaataatactaacaagtgtctttgaaattttgttttaattagaaaagttcaatttcttaaaagttcaaaattcattttttaatagaaaatt |
4508385 |
T |
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| Q |
127 |
gatagtttttcttcaatatataactagctagtgtccaaattaaaacttatggatggccctatttaatttgaaagagtaagcaatctttgtccacttgtat |
226 |
Q |
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| T |
4508384 |
gatagtttttcttcaata----actagctagtgtccaaattaaaacttatggatggccctatttaatttgaaagagtaagcaatctttgtccacttgtat |
4508289 |
T |
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| Q |
227 |
atgtttgggtgttatgtgtaaaatgttacttatagtactcattagttacatagggtgaaaatcaagtgaacacatgcagtaaataatcctcaagagggga |
326 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4508288 |
atgtttgggtgttatgtgtaaaatgttactcatagtactcattagttacatagggtgaaaatcaagtgaacacatgcagtaaatagtcctcaagagggga |
4508189 |
T |
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| Q |
327 |
ccattgttggacacttcgaaaagcggctagagtacaacactttatc |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4508188 |
ccattgttggacacttcgaaaagcggctagagtacaacactttatc |
4508143 |
T |
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