View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_low_47 (Length: 386)

Name: NF1643_low_47
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_low_47
NF1643_low_47
[»] chr8 (3 HSPs)
chr8 (33-223)||(21560678-21560867)
chr8 (320-371)||(21560546-21560597)
chr8 (52-115)||(11426818-11426880)
[»] chr7 (2 HSPs)
chr7 (33-223)||(17034438-17034627)
chr7 (278-371)||(17034682-17034775)
[»] chr3 (3 HSPs)
chr3 (33-223)||(43264749-43264938)
chr3 (278-371)||(43264601-43264694)
chr3 (52-115)||(26216771-26216833)
[»] chr2 (5 HSPs)
chr2 (33-223)||(37900925-37901114)
chr2 (278-371)||(37900777-37900870)
chr2 (52-115)||(5967504-5967566)
chr2 (178-223)||(16867863-16867908)
chr2 (65-109)||(652612-652656)
[»] chr6 (5 HSPs)
chr6 (112-190)||(15351857-15351935)
chr6 (112-190)||(15372284-15372362)
chr6 (112-190)||(15321699-15321777)
chr6 (112-190)||(15375040-15375118)
chr6 (112-187)||(15354844-15354920)
[»] chr4 (1 HSPs)
chr4 (52-115)||(5432166-5432228)
[»] chr5 (2 HSPs)
chr5 (82-115)||(10185023-10185056)
chr5 (178-223)||(33533440-33533485)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 21560867 - 21560678
Alignment:
Q  33 tattgatgataaagggtaggacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 132  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21560867 tattgatgataaagggtaggacaattcatt-aagaaaaacaattcaataaaaataaatttaaaccattaactacaatctctattttattttatgattttg 21560769  T
Q  133 actttaatttctaatacaaatgaatgacacatcgtctatcttaaaagtaatttttatctattccatgtattctatattcagttgatgtgag 223  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21560768 actttaatttctaatacaaatgaatgacacatcgtctatgttaaaagtaatttttatctattccatgtattctatattcagttgatgtgag 21560678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 320 - 371
Target Start/End: Complemental strand, 21560597 - 21560546
Alignment:
Q  320 tatttatcatccaaagttattcaaaattatgggaccgagaacaactatatta 371  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21560597 tatttatcacccaaagttattcaaaattatgggaccgagaacaactatatta 21560546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 11426880 - 11426818
Alignment:
Q  52 gacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctat 115  Q
    ||||||||||| ||||||||  ||||||  |||||||||| |||||||||||||| ||||||||    
T  11426880 gacaattcatt-aagaaaaatgattcaaccaaaataaattaaaaccattaactacgatctctat 11426818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 33 - 223
Target Start/End: Original strand, 17034438 - 17034627
Alignment:
Q  33 tattgatgataaagggtaggacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 132  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17034438 tattgatgataaagggtaggacaattcatt-aagaaaaacaattcaacaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 17034536  T
Q  133 actttaatttctaatacaaatgaatgacacatcgtctatcttaaaagtaatttttatctattccatgtattctatattcagttgatgtgag 223  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17034537 actttaatttctaatacaaatgaatgacacatcgtctatgttaaaagtaatttttatctattccatgtattctatattcagttgatgtgag 17034627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 371
Target Start/End: Original strand, 17034682 - 17034775
Alignment:
Q  278 gatctatcaaatattcaaatttattatattcaatnnnnnnnntatttatcatccaaagttattcaaaattatgggaccgagaacaactatatta 371  Q
    ||||||||||||||||||||||||||||||||||        ||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  17034682 gatctatcaaatattcaaatttattatattcaataaaaaaaatatttatcacccaaagttattcaaaattatgggacctagaacaactatatta 17034775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 43264938 - 43264749
Alignment:
Q  33 tattgatgataaagggtaggacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 132  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43264938 tattgatgataaagggtaggacaattcatt-aagaaaaacaattcaacaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 43264840  T
Q  133 actttaatttctaatacaaatgaatgacacatcgtctatcttaaaagtaatttttatctattccatgtattctatattcagttgatgtgag 223  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43264839 actttaatttctaatacaaatgaatgacacatcgtctatgttaaaaataatttttatctattccatgtattctatattcagttgatgtgag 43264749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 371
Target Start/End: Complemental strand, 43264694 - 43264601
Alignment:
Q  278 gatctatcaaatattcaaatttattatattcaatnnnnnnnntatttatcatccaaagttattcaaaattatgggaccgagaacaactatatta 371  Q
    ||||||||||||||||||||||||||||||||||        ||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  43264694 gatctatcaaatattcaaatttattatattcaataaaaaaaatatttatcacctaaagttattcaaaattatgggaccgagaacaactatatta 43264601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 26216771 - 26216833
Alignment:
Q  52 gacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctat 115  Q
    ||||||||||| ||||||||  ||||||  |||||||||| |||||||||||||| ||||||||    
T  26216771 gacaattcatt-aagaaaaatgattcaaccaaaataaattaaaaccattaactacgatctctat 26216833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 37901114 - 37900925
Alignment:
Q  33 tattgatgataaagggtaggacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 132  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37901114 tattgaggataaagggtaggacaattcatt-aagaaaaacaattcaacaaaaataaatttaaaccattaactacaatctctattttattttatgattttg 37901016  T
Q  133 actttaatttctaatacaaatgaatgacacatcgtctatcttaaaagtaatttttatctattccatgtattctatattcagttgatgtgag 223  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37901015 actttaatttctaatacaaatgaatgacacatcgtctatgttaaaagtaatttttatctattccatgtattctatattcagttgatgtgag 37900925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 278 - 371
Target Start/End: Complemental strand, 37900870 - 37900777
Alignment:
Q  278 gatctatcaaatattcaaatttattatattcaatnnnnnnnntatttatcatccaaagttattcaaaattatgggaccgagaacaactatatta 371  Q
    ||||||||||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37900870 gatctatcaaatattcaaatttattatattcaataaaaaaaatatttatcacccaaagttattcaaaattatgggaccgagaacaactatatta 37900777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 5967566 - 5967504
Alignment:
Q  52 gacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctat 115  Q
    ||||||||||| ||||||||  ||||||  |||||||||| |||||||||||||||||||||||    
T  5967566 gacaattcatt-aagaaaaatgattcaaccaaaataaattaaaaccattaactacaatctctat 5967504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 16867863 - 16867908
Alignment:
Q  178 agtaatttttatctattccatgtattctatattcagttgatgtgag 223  Q
    ||||||||||||||| || || ||||||||||||| ||||||||||    
T  16867863 agtaatttttatctactctatatattctatattcatttgatgtgag 16867908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 652656 - 652612
Alignment:
Q  65 agaaaaacaattcaagaaaaataaatttaaaccattaactacaat 109  Q
    |||||||  |||||| ||||||||||||||||||||| |||||||    
T  652656 agaaaaaggattcaacaaaaataaatttaaaccattatctacaat 652612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 15351857 - 15351935
Alignment:
Q  112 ctattttattttatgattttgactttaatttctaatacaaatgaatgacacatcgtctatcttaaaagtaatttttatc 190  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||| || || || | ||||||||||||||||    
T  15351857 ctattttatttcatgattttgactttcatttctaatacaaatgaatgacacgtcatccatatcaaaagtaatttttatc 15351935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 15372284 - 15372362
Alignment:
Q  112 ctattttattttatgattttgactttaatttctaatacaaatgaatgacacatcgtctatcttaaaagtaatttttatc 190  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||  || || || ||| ||||||||||||||    
T  15372284 ctattttattttatgattttgactttcatttctaatacaaatgaatgacatgtcatccattttagaagtaatttttatc 15372362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 15321699 - 15321777
Alignment:
Q  112 ctattttattttatgattttgactttaatttctaatacaaatgaatgacacatcgtctatcttaaaagtaatttttatc 190  Q
    |||||||| ||||||||||||||||| |||||||||||||||||| ||||| || || || | ||||||||||||||||    
T  15321699 ctattttagtttatgattttgactttcatttctaatacaaatgaacgacacgtcatccatatcaaaagtaatttttatc 15321777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 15375118 - 15375040
Alignment:
Q  112 ctattttattttatgattttgactttaatttctaatacaaatgaatgacacatcgtctatcttaaaagtaatttttatc 190  Q
    |||||||||||||||||||||||||| ||| |||||||||||||| ||||| || || || | ||||||||||||||||    
T  15375118 ctattttattttatgattttgactttcattcctaatacaaatgaacgacacgtcatccatataaaaagtaatttttatc 15375040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 15354920 - 15354844
Alignment:
Q  112 ctattttattttatgattttgactttaatttctaatac-aaatgaatgacacatcgtctatcttaaaagtaattttt 187  Q
    |||||||| ||||||| ||||||||| ||||||||||| ||||||||||||| || || || | ||||||| |||||    
T  15354920 ctattttagtttatgaatttgactttcatttctaatacaaaatgaatgacacgtcatccatatcaaaagtatttttt 15354844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 5432166 - 5432228
Alignment:
Q  52 gacaattcatttaagaaaaacaattcaagaaaaataaatttaaaccattaactacaatctctat 115  Q
    ||||||||||| ||||||||  ||||||  |||||||||| |||||||||||||| ||||||||    
T  5432166 gacaattcatt-aagaaaaatgattcaaccaaaataaattaaaaccattaactacgatctctat 5432228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 10185023 - 10185056
Alignment:
Q  82 aaaataaatttaaaccattaactacaatctctat 115  Q
    |||||||||| |||||||||||||||||||||||    
T  10185023 aaaataaattaaaaccattaactacaatctctat 10185056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 33533485 - 33533440
Alignment:
Q  178 agtaatttttatctattccatgtattctatattcagttgatgtgag 223  Q
    ||||||||||||||| || || ||||||||||||| ||||||||||    
T  33533485 agtaatttttatctactctatatattctatattcatttgatgtgag 33533440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University