View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_48 (Length: 386)
Name: NF1643_low_48
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 27575195 - 27574826
Alignment:
| Q |
1 |
ataattctaaaagaagtattagctcatcgactgaacctactctttgttttcagatatatcattttgaattctctctatgaaactcatcatggcgttcaag |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27575195 |
ataatcctaaaagaagtattagctcatcgactgaacctcctctttgttttcagatatatcattttgaattctctctatgaaactcatcatggtgttcaag |
27575096 |
T |
|
| Q |
101 |
ctcttatcatctgaaaaataaagaagaaaactattaattacacaaccattttttgggagaaatgattaaactatttagtacatatnnnnnnnntatatgt |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27575095 |
ctcttatcatctgaaaaataaaggagaaaactattaattacacaaccattttttgggagaaatgattaaactatttagtacatataaaaaaaa-atatgt |
27574997 |
T |
|
| Q |
201 |
tagaagaccgctcattagaaacatataaacaagataaatagagaagattagtagcacacctaatcttggtactgtgtgtccttttgggtgatgaattacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27574996 |
tagaagaccgctcattagaaacatataaacaagataaatagagaagattagtagcacacctaatcttggtactgtgtgtccttttgggtgatgaattacc |
27574897 |
T |
|
| Q |
301 |
acaggttcaacacaagaatctattagttcttttccatattccttcaaaaaatcatgctcccctgcaataag |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27574896 |
acaggttcaacacaagaatctattagttcttttccatattccttcaaaaaatcatgctcccctgcaataag |
27574826 |
T |
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