View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_49 (Length: 378)
Name: NF1643_low_49
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 57 - 375
Target Start/End: Complemental strand, 20086125 - 20085810
Alignment:
| Q |
57 |
taatcaattagttgttacgcaactaattgttagttcctctacttgtctaccctataacacacatctatcactatatcttcttcttcaatagaaaattgca |
156 |
Q |
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||||||||||||| ||| ||||||||||||| || | |||||||||||||||| |||||| |||| ||||||||||||||||||||| |||||||||| |
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| T |
20086125 |
taatcaattagtttttatgcaactaattgtttattgcgctacttgtctaccctacaacaca--tctaccactatatcttcttcttcaatcgaaaattgca |
20086028 |
T |
|
| Q |
157 |
gtagttcatttacttatgttcaacagccactctacgactctttgattttcccccctttactactgttcatcgtctattttcttcaataagccaccatcat |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20086027 |
gtagttcatttacttatgttcaacagccactctacgactctttgattttccccc-tttactactgttcatcgtctattttcttcaataagccaccatcat |
20085929 |
T |
|
| Q |
257 |
ccttctaacgataaatattcacaaaattcctctcttttaaatgaattactaatatttgatcattcaaccagtttcccttacatcaagattgaattcaatc |
356 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20085928 |
ccttctaaccttaaatattcacaaaattcctctcttttaaatgaattactaatatttgatcattcaaccagtttcccttacatcaagattgaattcaatc |
20085829 |
T |
|
| Q |
357 |
tttgtcctcgtgagtttaa |
375 |
Q |
| |
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||||||||||||||||||| |
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| T |
20085828 |
tttgtcctcgtgagtttaa |
20085810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 63 - 358
Target Start/End: Complemental strand, 20069677 - 20069385
Alignment:
| Q |
63 |
attagttgttacgcaactaattgttagttcctctacttgtctaccctataacacacatctatcactatatcttcttcttcaatagaaaattgcagtagtt |
162 |
Q |
| |
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|||| |||||| |||| |||||||| || ||||| || |||||||| ||| ||| |||| ||||||||||||||||||||| |||||||||| ||||| |
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| T |
20069677 |
attacttgttatgcaagtaattgtttatttctctagttatctaccctttaataca--tctaccactatatcttcttcttcaatcgaaaattgcattagtt |
20069580 |
T |
|
| Q |
163 |
catttacttatgttcaacagccactctacgactctttgattttcccccctttactactgttcatcgtctattttcttcaataagccaccatcatccttct |
262 |
Q |
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|||||| || ||||||| ||||||||||| ||| |||||||||| ||| |||||||||||| ||| ||||||||||||||||||||| |||||||||||| |
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| T |
20069579 |
catttatttctgttcaaaagccactctacaactgtttgattttctccc-tttactactgtttatcatctattttcttcaataagccatcatcatccttct |
20069481 |
T |
|
| Q |
263 |
aacgataaatattcacaaaattcctctcttttaaatgaattactaatatttgatcattcaaccagtttcccttacatcaagattgaattcaatctt |
358 |
Q |
| |
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||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||| |||||||||||||||||| |
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| T |
20069480 |
aaccttaaatcttcacaaaattcctctcttttaaatgaattactaatatttgatctttcaaccagttttctttacatgaagattgaattcaatctt |
20069385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 57 - 265
Target Start/End: Complemental strand, 20072124 - 20071918
Alignment:
| Q |
57 |
taatcaattagttgttacgcaactaattgttagttcctctacttgtctaccctataacacacatctatcactatatcttcttcttcaatagaaaattgca |
156 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || | |||||||||||||||| |||||| |||| ||||||||||||||||||||| |||||||||| |
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| T |
20072124 |
taatcaattagttgttatgcaactaattgtttattgcgctacttgtctaccctacaacaca--tctaccactatatcttcttcttcaatcgaaaattgca |
20072027 |
T |
|
| Q |
157 |
gtagttcatttacttatgttcaacagccactctacgactctttgattttcccccctttactactgttcatcgtctattttcttcaataagccaccatcat |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
20072026 |
gtagttcatttacttatgttcaacagccactctacgactctttgatttttccccctttactactgttcatcatctattttcttcaataagccatcatcat |
20071927 |
T |
|
| Q |
257 |
ccttctaac |
265 |
Q |
| |
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||||||||| |
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|
| T |
20071926 |
ccttctaac |
20071918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 45396578 - 45396606
Alignment:
| Q |
23 |
agttggtaggacaatgcataatatatgca |
51 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
45396578 |
agttggtaggacaatgcataatatatgca |
45396606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 12735189 - 12735161
Alignment:
| Q |
23 |
agttggtaggacaatgcataatatatgca |
51 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
12735189 |
agttggtaggacaatgcataatatatgca |
12735161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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