View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_low_5 (Length: 622)

Name: NF1643_low_5
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_low_5
NF1643_low_5
[»] chr8 (7 HSPs)
chr8 (127-474)||(23381651-23381998)
chr8 (4-294)||(23344893-23345170)
chr8 (313-474)||(23347405-23347564)
chr8 (531-605)||(23347627-23347701)
chr8 (531-605)||(23381518-23381592)
chr8 (26-83)||(23381994-23382051)
chr8 (13-79)||(12659878-12659944)
[»] chr7 (1 HSPs)
chr7 (4-79)||(1032540-1032615)
[»] chr5 (3 HSPs)
chr5 (30-79)||(19402643-19402692)
chr5 (20-76)||(26690209-26690265)
chr5 (20-76)||(26959941-26959997)
[»] chr2 (1 HSPs)
chr2 (14-81)||(20496794-20496861)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 127 - 474
Target Start/End: Complemental strand, 23381998 - 23381651
Alignment:
Q  127 acgaaagaaaattcttgcattagtcaaattaaaaattgcctttcaaacgtgacatgtgcctttcccatttcattttacaaatgtcaacaaaatcagcata 226  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  23381998 acgaaagaaaattcttgcattagtcacat-aaaaattgcctttcaaacgtgacacgtgcctttctcatttcattttacaaatgtcaacaaaatcagcata 23381900  T
Q  227 ccaaatgaaaatggaaaattattcttctgacaattgacacaatcactctaacatcattcaacataaacc--caattgc-tctttgaaagatatatttctg 323  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||  |||   | | ||||  ||||    || || ||| |||||||||||    
T  23381899 ccaaatgaaaatggaaaattattcttctgacaattgacacaatgacactaaca--attgttcttcaaccaacaatcaaatcattcaaacatatatttctg 23381802  T
Q  324 attttattattttattacacagtcattccatttctgattgcatttgtcatatttgatatattgccaaaagtagcaatttaaaaacacgttgctttgaata 423  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  23381801 attttattattttagtacacagtcattccatttctgattgcatttgtcatatttgatatgttaccaaaagtagcaatttaaaaacacgttgctttgaata 23381702  T
Q  424 tacatgtcacatgtgtgatagtaataatgtatattttcagaatcttacata 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23381701 tacatgtcacatgtgtgatagtaataatgtatattttcagaatcttacata 23381651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 4 - 294
Target Start/End: Original strand, 23344893 - 23345170
Alignment:
Q  4 aaccgcactaaaccataacataaaacaaatattaattaaacttatatcacacaactcaatactcatagaaactcaacgaatagatccc-cttaccgttaa 102  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||              |||||||||||||| |||||||| |||||||||||    
T  23344893 aaccgcactaaaccacaacataaaacaaatattaattaaacttatatcaca--------------tagaaactcaacgagtagatcccacttaccgttaa 23344978  T
Q  103 ggggaaagttttagtaaaccatctacgaaagaaaattcttgcattagtcaaattaaaaattgcctttcaaacgtgacatgtgcctttcccatttcatttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||||||||||||||||||||    
T  23344979 ggggaaagttttagtaaaccatctacgaaagaaaattcttgcattagtcacataaaaaatagcctttcaaacgtgacacgtgcctttcccatttcatttt 23345078  T
Q  203 acaaatgtcaacaaaatcagcataccaaatgaaaatggaaaattattcttctgacaattgacacaatcactctaacatcattcaacataaac 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||    
T  23345079 acaaatgtcaacaaaatcagcataccaaatgaaaatggaaaattattcttctgacaattgacacaatgacactaacatcattcaacagaaac 23345170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 313 - 474
Target Start/End: Original strand, 23347405 - 23347564
Alignment:
Q  313 atatatttctgattttattattttattacacagtcattccatttctgattgcatttgtcatatttgatatattgccaaaagtagcaatttaaaaacacgt 412  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||    
T  23347405 atatatttctgattttattattttagtacacagtcattccatttctgattgcatttgtcat--ttgatatattgccaaaagtagaaatttaaaaacacgt 23347502  T
Q  413 tgctttgaatatacatgtcacatgtgtgatagtaataatgtatattttcagaatcttacata 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23347503 tgctttgaatatacatgtcacatgtgtgatagtaataatgtatattttcagaatcttacata 23347564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 531 - 605
Target Start/End: Original strand, 23347627 - 23347701
Alignment:
Q  531 attctcctacgtaagaacatgcacatcattagatactttagcaccaaacaaatctatccaagatggtgagacttt 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23347627 attctcctacgtaagaacatgcacatcattagatactttagcaccaaacaaatctatccaaaatggtgagacttt 23347701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 531 - 605
Target Start/End: Complemental strand, 23381592 - 23381518
Alignment:
Q  531 attctcctacgtaagaacatgcacatcattagatactttagcaccaaacaaatctatccaagatggtgagacttt 605  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23381592 attctcctacctaagaacatgcacatcattagatactttagcaccaaacaaatctattcaagatggtgagacttt 23381518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 23382051 - 23381994
Alignment:
Q  26 aaacaaatattaattaaacttatatcacacaactcaatactcatagaaactcaacgaa 83  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23382051 aaacaaatattaattaaacttatatcacacaattcaatactcatagaaactcaacgaa 23381994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 12659878 - 12659944
Alignment:
Q  13 aaaccataacataaaacaaatattaattaaacttatatcacacaactcaatactcatagaaactcaa 79  Q
    |||||| ||||||  | ||| ||||||||||| ||| ||||| || |||||||||||||||||||||    
T  12659878 aaaccacaacataggaaaaacattaattaaacatatgtcacataaatcaatactcatagaaactcaa 12659944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 1032540 - 1032615
Alignment:
Q  4 aaccgcactaaaccataacataaaacaaatattaattaaacttatatcacacaactcaatactcatagaaactcaa 79  Q
    |||||||| |||||||||||||| | |||||||| |||||||||| |||| |||| | ||||||||||||||||||    
T  1032540 aaccgcaccaaaccataacataagagaaatattatttaaacttatgtcacccaacccgatactcatagaaactcaa 1032615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 19402692 - 19402643
Alignment:
Q  30 aaatattaattaaacttatatcacacaactcaatactcatagaaactcaa 79  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||||||||    
T  19402692 aaatattaattaaacttatgtcactcaacccaatactcatagaaactcaa 19402643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 26690265 - 26690209
Alignment:
Q  20 aacataaaacaaatattaattaaacttatatcacacaactcaatactcatagaaact 76  Q
    ||||||| | |||| |||||| ||| ||| ||||| |||||||||||||||||||||    
T  26690265 aacataagaaaaatgttaattgaacctatgtcacataactcaatactcatagaaact 26690209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 26959997 - 26959941
Alignment:
Q  20 aacataaaacaaatattaattaaacttatatcacacaactcaatactcatagaaact 76  Q
    ||||||| | |||| |||||| ||| ||| ||||| |||||||||||||||||||||    
T  26959997 aacataagaaaaatgttaattgaacctatgtcacataactcaatactcatagaaact 26959941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 20496861 - 20496794
Alignment:
Q  14 aaccataacataaaacaaatattaattaaacttatatcacacaactcaatactcatagaaactcaacg 81  Q
    ||||| ||||||| | ||| | ||||||||||||| |||| ||  |||||||||||||||||||||||    
T  20496861 aaccacaacataacagaaacaataattaaacttatgtcactcagatcaatactcatagaaactcaacg 20496794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University