View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_low_53 (Length: 366)

Name: NF1643_low_53
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_low_53
NF1643_low_53
[»] chr7 (3 HSPs)
chr7 (124-349)||(5213869-5214094)
chr7 (1-71)||(5214151-5214221)
chr7 (137-189)||(8308989-8309041)
[»] chr3 (1 HSPs)
chr3 (128-189)||(26297843-26297904)
[»] chr1 (3 HSPs)
chr1 (227-284)||(15850883-15850940)
chr1 (124-201)||(1173996-1174075)
chr1 (233-288)||(34935186-34935241)
[»] chr2 (2 HSPs)
chr2 (202-270)||(20977016-20977084)
chr2 (219-278)||(39526853-39526912)
[»] chr4 (3 HSPs)
chr4 (229-288)||(32021998-32022056)
chr4 (142-187)||(13275704-13275749)
chr4 (237-273)||(24042265-24042301)
[»] chr6 (2 HSPs)
chr6 (228-278)||(30831126-30831176)
chr6 (160-200)||(1462370-1462410)
[»] scaffold0400 (1 HSPs)
scaffold0400 (201-254)||(3349-3401)
[»] scaffold0365 (1 HSPs)
scaffold0365 (201-254)||(3993-4045)
[»] chr5 (4 HSPs)
chr5 (234-274)||(17044328-17044368)
chr5 (225-288)||(17695313-17695377)
chr5 (128-189)||(20694734-20694797)
chr5 (219-263)||(24248376-24248420)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 124 - 349
Target Start/End: Complemental strand, 5214094 - 5213869
Alignment:
Q  124 cagacaactccatatgtgttgagtctttttattaataaatcatgtaattcagcaaaacaatacatctgatgtaagttaaagaatgaagatttacgaaggt 223  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5214094 cagacaactccatatgtgttgagtctttttattgataaatcatgtaattcagcaaaacaatatatctgatgtaagttaaagaatgaagatttacgaaggt 5213995  T
Q  224 tttagaaggttttgaagacaatacaagttggagaaattttatcccaagtcttaaggcatttcaaggaagaagagcattcaaagaacgaatgaaaaactac 323  Q
    |||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5213994 tttagaagcttttgaagacaatacaagttggagaaattttgtctcaagtcttaaggcatttcaaggaagaagagcattcaaagaacgaatgaaaaactac 5213895  T
Q  324 aaaattcggccctggttgttgtccat 349  Q
    ||||||||||||||||||||||||||    
T  5213894 aaaattcggccctggttgttgtccat 5213869  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 5214221 - 5214151
Alignment:
Q  1 ttgagtcatttgaataatcatttgaggataaattaggggagttgcagatgagttgttcatggtttgaggga 71  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5214221 ttgagtcatttgaataatcatttgaggataaattaggggagtttcagatgagttgttcatggtttgaggga 5214151  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 8309041 - 8308989
Alignment:
Q  137 atgtgttgagtctttttattaataaatcatgtaattcagcaaaacaatacatc 189  Q
    |||| ||||||||||||| ||| ||||||||||| |||||||||||| |||||    
T  8309041 atgttttgagtctttttagtaagaaatcatgtaaatcagcaaaacaagacatc 8308989  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 26297843 - 26297904
Alignment:
Q  128 caactccatatgtgttgagtctttttattaataaatcatgtaattcagcaaaacaatacatc 189  Q
    ||||| |||||||||||||||| |||| | ||||||||||||| || ||||||||| |||||    
T  26297843 caacttcatatgtgttgagtctatttagtgataaatcatgtaaatcggcaaaacaagacatc 26297904  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 15850940 - 15850883
Alignment:
Q  227 agaaggttttgaagacaatacaagttggagaaattttatcccaagtcttaaggcattt 284  Q
    |||||||||||||||||||||||||| |||||| || ||||||| | | |||||||||    
T  15850940 agaaggttttgaagacaatacaagtttgagaaaattcatcccaaatttcaaggcattt 15850883  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 1173996 - 1174075
Alignment:
Q  124 cagacaactccatatgtg--ttgagtctttttattaataaatcatgtaattcagcaaaacaatacatctgatgtaagtta 201  Q
    ||||||||| |||| |||  |||||||||||||||||||||||||||| ||| ||||| ||| | |||| ||| ||||||    
T  1173996 cagacaacttcataggtgctttgagtctttttattaataaatcatgtacttcggcaaagcaaaatatctcatggaagtta 1174075  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 34935241 - 34935186
Alignment:
Q  233 ttttgaagacaatacaagttggagaaattttatcccaagtcttaaggcatttcaag 288  Q
    ||||||||| |||||||||||| |||| || |||||||||  ||||||||||||||    
T  34935241 ttttgaagataatacaagttggggaaaattcatcccaagttctaaggcatttcaag 34935186  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 20977016 - 20977084
Alignment:
Q  202 aagaatgaagatttacgaaggttttagaaggttttgaagacaatacaagttggagaaattttatcccaa 270  Q
    ||||||||||||  || ||| ||||||||||| ||||| ||||||||| |||| |||||||| ||||||    
T  20977016 aagaatgaagatcgacaaagcttttagaaggtgttgaatacaatacaatttggggaaattttgtcccaa 20977084  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 39526912 - 39526853
Alignment:
Q  219 aaggttttagaaggttttgaagacaatacaagttggagaaattttatcccaagtcttaag 278  Q
    |||||||||||||| |||||||||| | ||||||||||||||| | || |||||| ||||    
T  39526912 aaggttttagaaggctttgaagacattgcaagttggagaaattatgtctcaagtcctaag 39526853  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 288
Target Start/End: Original strand, 32021998 - 32022056
Alignment:
Q  229 aaggttttgaagacaatacaagttggagaaattttatcccaagtcttaaggcatttcaag 288  Q
    |||||||||||||||||||||||||| |||| || ||||||| | | |||||||||||||    
T  32021998 aaggttttgaagacaatacaagttggggaaa-ttcatcccaaatttcaaggcatttcaag 32022056  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 13275749 - 13275704
Alignment:
Q  142 ttgagtctttttattaataaatcatgtaattcagcaaaacaataca 187  Q
    |||||||||||||||  ||||||||||||||| ||||| |||||||    
T  13275749 ttgagtctttttattgctaaatcatgtaattcggcaaagcaataca 13275704  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 24042301 - 24042265
Alignment:
Q  237 gaagacaatacaagttggagaaattttatcccaagtc 273  Q
    |||||||||||||||| | ||||||||||||||||||    
T  24042301 gaagacaatacaagttagggaaattttatcccaagtc 24042265  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 30831176 - 30831126
Alignment:
Q  228 gaaggttttgaagacaatacaagttggagaaattttatcccaagtcttaag 278  Q
    ||||||||||||||||| |||||||| |||||| || ||||||||| ||||    
T  30831176 gaaggttttgaagacaaaacaagttgaagaaatgttgtcccaagtcctaag 30831126  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 1462370 - 1462410
Alignment:
Q  160 aaatcatgtaattcagcaaaacaatacatctgatgtaagtt 200  Q
    |||||||||||||||||||||||||||| || ||| |||||    
T  1462370 aaatcatgtaattcagcaaaacaatacaacttatggaagtt 1462410  T

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Target: scaffold0400 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 3401 - 3349
Alignment:
Q  201 aaagaatgaagatttacgaaggttttagaaggttttgaagacaatacaagttgg 254  Q
    |||||||||||||  |||| |||||| ||||| |||||||||||||||||||||    
T  3401 aaagaatgaagatcaacga-ggttttggaaggctttgaagacaatacaagttgg 3349  T

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Target: scaffold0365 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 4045 - 3993
Alignment:
Q  201 aaagaatgaagatttacgaaggttttagaaggttttgaagacaatacaagttgg 254  Q
    |||||||||||||  |||| |||||| ||||| |||||||||||||||||||||    
T  4045 aaagaatgaagatcaacga-ggttttggaaggctttgaagacaatacaagttgg 3993  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 17044368 - 17044328
Alignment:
Q  234 tttgaagacaatacaagttggagaaattttatcccaagtct 274  Q
    |||||||||| ||||||||||||||||||| | ||||||||    
T  17044368 tttgaagacattacaagttggagaaattttgttccaagtct 17044328  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 17695377 - 17695313
Alignment:
Q  225 ttagaaggtttt-gaagacaatacaagttggagaaattttatcccaagtcttaaggcatttcaag 288  Q
    |||||||||||| |||||||||||||||||| |||| || |||| ||||   |||||||||||||    
T  17695377 ttagaaggtttttgaagacaatacaagttggggaaaattcatcctaagttccaaggcatttcaag 17695313  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 20694734 - 20694797
Alignment:
Q  128 caactccatatgtgtt--gagtctttttattaataaatcatgtaattcagcaaaacaatacatc 189  Q
    ||||| ||||||||||  ||||||||||| ||| ||||||||||| || ||||||||| |||||    
T  20694734 caactgcatatgtgttttgagtctttttagtaagaaatcatgtaaatcggcaaaacaagacatc 20694797  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 24248420 - 24248376
Alignment:
Q  219 aaggttttagaaggttttgaagacaatacaagttggagaaatttt 263  Q
    |||||| || |||| |||||||||| |||||||||||||||||||    
T  24248420 aaggttctataagggtttgaagacattacaagttggagaaatttt 24248376  T

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