View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1643_low_56 (Length: 360)
Name: NF1643_low_56
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_56 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 1331477 - 1331175
Alignment:
| Q |
18 |
tcattaatagcgatagtttgtttcatcattagtaacaacatttgcatcataggtcacaccaattgcatcaacattaacgtcattagtaccatcatgagtc |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1331477 |
tcattaatagcgatagttt----catcattagtaacaacatttgcatcataggtcacaccaattgcatcaacattaacgtcatcagtaccatcatgagtc |
1331382 |
T |
|
| Q |
118 |
gcgtcatttgcatcaacaatgtcgtcatcatcaacaaaattttcaacatgagtaataacaagtgttgcacccgcgcttcaaaagccttggaggatgctat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
1331381 |
gcgtcatttgcatcaacaatgtcgtcattatcaacaaaattttcaacatgagtaataacaagtg--------gcacttcaaaagccttggaggatgctat |
1331290 |
T |
|
| Q |
218 |
gccgtatgtattctccttgtcaacatatttatgaattgttttctttgaaacatatgc-gggnnnnnnnnaccacgatctacattttccacaaccttccga |
316 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||||||||||||| ||||||| |
|
|
| T |
1331289 |
gccgtatgcattctccttgtcaacatatttatgaattgttttcttcgaaacatatgcaggtttttttttaccatgatctacattttccacaatcttccga |
1331190 |
T |
|
| Q |
317 |
gggattaaccaacga |
331 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
1331189 |
gggatcaaccaacga |
1331175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University