View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1643_low_58 (Length: 350)
Name: NF1643_low_58
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_58 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 7998254 - 7998488
Alignment:
| Q |
9 |
caagaatatcgtgaaagagttgcaacggaagtcctttggtgaagatgccaccaatctaataacgtgatgaaacatgcaatactcttacttggctgtaagc |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7998254 |
caagaaaatcgtgaaagagttgcaacggaagacctttggtgaagatgccaccaatctgataacgtgatgaaacatgtaatactcttacttggctgtaagc |
7998353 |
T |
|
| Q |
109 |
aactttttcccgcaaaaaatgtatattcatctcgatgtgttcggtgtgttgatgttgaactgggttgccggaaaggtacattgcactcacgttatcacaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7998354 |
aactttttcccgcaaaaaatgtatattcatctcgatgtgttcggtgtgttgatgttgaactgggttgccggaagggtacattgcactcacgttatcacaa |
7998453 |
T |
|
| Q |
209 |
taaacaagagtagctgtcataactggaaaatgtag |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7998454 |
taaacaagagtagctgtcataactggaaaatgtag |
7998488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 7998704 - 7998780
Alignment:
| Q |
260 |
aatcttgaatgtatactaagctctcttgtttaggttaacaataaaaataattttgaaaaagaagcatatttgtttgt |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7998704 |
aatcttgaatgtatactaagctctcttgtttaggttaacaataaaaataattttgaaaaagaagcatatttgtttgt |
7998780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 3955469 - 3955266
Alignment:
| Q |
22 |
aaagagttgcaacggaagtcctttggtgaagatgccaccaatctaataacgtgatgaaacatgcaatactcttacttggctgtaagcaactttttcccgc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | || | |||||||| | ||||| || |||| |||||||| || ||||| || ||| |
|
|
| T |
3955469 |
aaagagttgcaacggaagtcctttggtgaagatgtcagcgatttggtaacgtgaagggacatgtaagactcgtacttggccacgggcgactttctcacgc |
3955370 |
T |
|
| Q |
122 |
aaaaaatgtatattcatctcgatgtgttcggtgtgttgatgttgaactgggttgccggaaaggtacattgcactcacgttatcacaataaacaagagtag |
221 |
Q |
| |
|
| ||||||||||| |||||||||||||| |||| |||||||||| |||||||||||||| | || | ||||||| || ||||||||||| ||||| | |
|
|
| T |
3955369 |
acaaaatgtatatccatctcgatgtgtttggtgcgttgatgttggactgggttgccggataaatagacaacactcacattgtcacaataaaccagagtgg |
3955270 |
T |
|
| Q |
222 |
ctgt |
225 |
Q |
| |
|
|||| |
|
|
| T |
3955269 |
ctgt |
3955266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 47249393 - 47249584
Alignment:
| Q |
22 |
aaagagttgcaacggaagtcctttggtgaagatgccaccaatctaataacgtgatgaaacatgcaatactcttacttggctgtaagcaactttttcccgc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | || | |||||||| | ||||| || |||| |||||||| | ||||| || ||| |
|
|
| T |
47249393 |
aaagagttgcaacggaagtcctttggtgaagatgtcagcgatttggtaacgtgaagggacatgtaagactcgtacttggccacgggtgactttctcacgc |
47249492 |
T |
|
| Q |
122 |
aaaaaatgtatattcatctcgatgtgttcggtgtgttgatgttgaactgggttgccggaaaggtacattgcactcacgttatcacaataaac |
213 |
Q |
| |
|
| ||||||||||| |||||||||||||| |||| |||||||||| |||||||||||||| | || | |||||||| || ||||||||||| |
|
|
| T |
47249493 |
acaaaatgtatatccatctcgatgtgtttggtgcgttgatgttggactgggttgccggataaatagacagcactcacattgtcacaataaac |
47249584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 188
Target Start/End: Original strand, 875401 - 875483
Alignment:
| Q |
106 |
agcaactttttcccgcaaaaaatgtatattcatctcgatgtgttcggtgtgttgatgttgaactgggttgccggaaaggtaca |
188 |
Q |
| |
|
|||||||||||| |||| ||| ||||||| ||| | |||||||| ||| |||||||||||||||| || |||| ||||||| |
|
|
| T |
875401 |
agcaactttttcgcgcacaaagtgtatatccattttgatgtgtttggtacgttgatgttgaactggattatcggataggtaca |
875483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 16656801 - 16656886
Alignment:
| Q |
125 |
aaatgtatattcatctcgatgtgttcggtgtgttgatgttgaactgggttgccggaaaggtacattgcactcacgttatcacaata |
210 |
Q |
| |
|
||||| |||| |||||| ||||||| || |||||||||||||| || || || || ||||| || ||||| |||||||||||||| |
|
|
| T |
16656801 |
aaatgaatatccatctcaatgtgtttcgtttgttgatgttgaaccggattacccgagaggtagatagcactgacgttatcacaata |
16656886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 25623741 - 25623932
Alignment:
| Q |
22 |
aaagagttgcaacggaagtcctttggtgaagatgccaccaatctaataacgtgatgaaacatgcaatactcttacttggctgtaagcaactttttcccgc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | || | |||||||| | ||||| || |||| |||||||| || ||||| || ||| |
|
|
| T |
25623741 |
aaagagttgcaacggaagtcctttggtgaagatgtcagcgatttggtaacgtgaagggacatgtaagactcgtacttggccacgggcgactttctcacgc |
25623840 |
T |
|
| Q |
122 |
aaaaaatgtatattcatctcgatgtgttcggtgtgttgatgttgaactgggttgccggaaaggtacattgcactcacgttatcacaataaac |
213 |
Q |
| |
|
| |||||||||||||||||||||||||| |||| |||||||||| |||||||||||||| | || | |||||||| |||||||||||||| |
|
|
| T |
25623841 |
acaaaatgtatattcatctcgatgtgtttggtgcgttgatgttggactgggttgccggataaatagacagcactcacattatcacaataaac |
25623932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 10533303 - 10533494
Alignment:
| Q |
22 |
aaagagttgcaacggaagtcctttggtgaagatgccaccaatctaataacgtgatgaaacatgcaatactcttacttggctgtaagcaactttttcccgc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | || | |||||||| | ||||| || |||| |||||||| || ||||| || ||| |
|
|
| T |
10533303 |
aaagagttgcaacggaagtcctttggtgaagatgtcagcgatttggtaacgtgaagggacatgtaagactcatacttggccacgggcgactttctcacgc |
10533402 |
T |
|
| Q |
122 |
aaaaaatgtatattcatctcgatgtgttcggtgtgttgatgttgaactgggttgccggaaaggtacattgcactcacgttatcacaataaac |
213 |
Q |
| |
|
| ||||||||||| |||||||||||||| |||| |||||||||| |||||||||||||| | || | |||||||| || ||||||||||| |
|
|
| T |
10533403 |
acaaaatgtatatccatctcgatgtgtttggtgcgttgatgttggactgggttgccggataaatagacagcactcacattgtcacaataaac |
10533494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 22949854 - 22949657
Alignment:
| Q |
22 |
aaagagttgcaacggaagtcctttggtgaagatgccaccaatctaataacgtgatgaaacatgcaatactcttacttggctgtaagcaactttttcccgc |
121 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| || | || | ||||||||| | |||| || |||| |||||||| ||| ||||| || ||| |
|
|
| T |
22949854 |
aaagagttgcaacggaaatcctttggtgaagatgtcagcgatttgataacgtgaagggacatataagactcgtacttggccacgagcgactttctcacgc |
22949755 |
T |
|
| Q |
122 |
aaaaaatgtatattcatctcgatgtgttcggtgtgttgatgttgaactgggttgccggaaaggtacattgcactcacgttatcacaataaacaagagt |
219 |
Q |
| |
|
| ||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||| | || | |||||||| || ||||||||||| ||||| |
|
|
| T |
22949754 |
acaaaatgtatatccatctcgatgtgtttggtgcattgatgttggactgggttgccggataaatagacagcactcacattgtcacaataaaccagagt |
22949657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 8045293 - 8045222
Alignment:
| Q |
109 |
aactttttcccgcaaaaaatgtatattcatctcgatgtgttcggtgtgttgatgttgaactgggttgccgga |
180 |
Q |
| |
|
|||||||||||||| ||| ||||||| || |||||||||| |||| |||||||||||||||| ||| |||| |
|
|
| T |
8045293 |
aactttttcccgcacaaagtgtatatcaatttcgatgtgtttggtgcgttgatgttgaactggattgtcgga |
8045222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 92085 - 91882
Alignment:
| Q |
22 |
aaagagttgcaacggaagtcctttggtgaagatgccaccaatctaataacgtgatgaaacatgcaatactcttacttggctgtaagcaactttttcccgc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | || | |||||||| | ||||| || |||| |||||||| || ||||| || ||| |
|
|
| T |
92085 |
aaagagttgcaacggaagtcctttggtgaagatgtcagcgatttggtaacgtgaagggacatgtaagactcatacttggccacgggcgactttctcacgc |
91986 |
T |
|
| Q |
122 |
aaaaaatgtatattcatctcgatgtgttcggtgtgttgatgttgaactgggttgccggaaaggtacattgcactcacgttatcacaataaacaagagtag |
221 |
Q |
| |
|
| ||||||||||| |||||||||||||| |||| |||||||||| ||| |||||||||| | || | | |||||| || ||||||||||| ||||| | |
|
|
| T |
91985 |
acaaaatgtatatacatctcgatgtgtttggtgcgttgatgttggactaggttgccggataaatagacagaactcacattgtcacaataaaccagagtgg |
91886 |
T |
|
| Q |
222 |
ctgt |
225 |
Q |
| |
|
|||| |
|
|
| T |
91885 |
ctgt |
91882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 180
Target Start/End: Complemental strand, 30351606 - 30351450
Alignment:
| Q |
24 |
agagttgcaacggaagtcctttggtgaagatgccaccaatctaataacgtgatgaaacatgcaatactcttacttggctgtaagcaactttttcccgcaa |
123 |
Q |
| |
|
||||||||||| ||||||||||||||||||| || |||| | |||||||| | | || ||| |||| ||||||| | | ||||| || |||| |
|
|
| T |
30351606 |
agagttgcaacataagtcctttggtgaagatgtcagcaatttggtaacgtgaagggagatacaagactcaaacttggccgcgggtgactttctcacgcac |
30351507 |
T |
|
| Q |
124 |
aaaatgtatattcatctcgatgtgttcggtgtgttgatgttgaactgggttgccgga |
180 |
Q |
| |
|
||||||||||||||||||||||| || |||| ||| ||||||||||||||||||||| |
|
|
| T |
30351506 |
aaaatgtatattcatctcgatgtatttggtgcgttaatgttgaactgggttgccgga |
30351450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University