View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_6 (Length: 604)
Name: NF1643_low_6
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 27324625 - 27324298
Alignment:
| Q |
8 |
ccaagaatatcaagttacatccaaattcaattaaaatttattcataataccaaaattatccttactcgtttccttcccactcttatgaatgatacgtgat |
107 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
27324625 |
ccaaaaatatcaagttacacccaaattcaattaaaatttattcataataccaaaattatccttactcatttccttcccactcttatgaatggtacgtgat |
27324526 |
T |
|
| Q |
108 |
tttaattcacgttaggtaaattaagtatatgtgatctgaattcacgtgataaaacaacaacctcaaaatccacctgatacatgattcctttgttgcttgc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27324525 |
tttaattcacgttaggtaaattaagtatatgtgatctgaattcatgtgataaaacaacaacctcaaaatccacctgatacatgattcctttgttgcctgc |
27324426 |
T |
|
| Q |
208 |
atctacactgtcttcacacagccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaaccct |
307 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27324425 |
atctacactgtcttcacacacccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaaccct |
27324326 |
T |
|
| Q |
308 |
ctcaaaggcaaacaccaaagcatataag |
335 |
Q |
| |
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|||||| ||||||||||||||||||||| |
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| T |
27324325 |
ctcaaatgcaaacaccaaagcatataag |
27324298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 502 - 588
Target Start/End: Complemental strand, 27324131 - 27324045
Alignment:
| Q |
502 |
cttatgtccgaacaattgaaaagctagaattgcacccaaatccattaaatcaagaaaaaacaatctttagtttgaaaactaaaattt |
588 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
27324131 |
cttatgtccgaacaattgaaaagctagaattgcacccaaatccattaaatcaagaaaaaacaatcttaagtttgaaaactagaattt |
27324045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 379 - 457
Target Start/End: Complemental strand, 27324254 - 27324176
Alignment:
| Q |
379 |
aaaatcaatcaaagcaagcaccaaagcatgcttcgtctaattaaatctctcttatttgcaattgaaaaacactattccc |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27324254 |
aaaatcaatcaaagcaagcaccaaagcatgcttcgtctaattaaatctctcttatttgcaattgaaaaacactattccc |
27324176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 292; Significance: 1e-163; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 28359420 - 28359093
Alignment:
| Q |
8 |
ccaagaatatcaagttacatccaaattcaattaaaatttattcataataccaaaattatccttactcgtttccttcccactcttatgaatgatacgtgat |
107 |
Q |
| |
|
|||| |||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28359420 |
ccaaaaatatcaagttacacccaaattcatttaaaatttattcataatatcaaaattatccttactcatttccttcccactcttatgaatgatacgtgat |
28359321 |
T |
|
| Q |
108 |
tttaattcacgttaggtaaattaagtatatgtgatctgaattcacgtgataaaacaacaacctcaaaatccacctgatacatgattcctttgttgcttgc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28359320 |
tttaattcacgttaggtaaattaagtatatgtgatctgaattcacgtgataaaacaacaacctcaaaatccacctgatacatgattcctttgttgcctgc |
28359221 |
T |
|
| Q |
208 |
atctacactgtcttcacacagccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaaccct |
307 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28359220 |
atctacattgtcttcacacacccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaaccct |
28359121 |
T |
|
| Q |
308 |
ctcaaaggcaaacaccaaagcatataag |
335 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
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|
| T |
28359120 |
ctcaaatgcaaacaccaaagcatataag |
28359093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 502 - 588
Target Start/End: Complemental strand, 28358926 - 28358840
Alignment:
| Q |
502 |
cttatgtccgaacaattgaaaagctagaattgcacccaaatccattaaatcaagaaaaaacaatctttagtttgaaaactaaaattt |
588 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
28358926 |
cttatgtccgaacaattgaaaagctagaattgcacccaaatccattaaatcaagaaaaaacaatcttaagtttgaaaactagaattt |
28358840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 379 - 457
Target Start/End: Complemental strand, 28359049 - 28358971
Alignment:
| Q |
379 |
aaaatcaatcaaagcaagcaccaaagcatgcttcgtctaattaaatctctcttatttgcaattgaaaaacactattccc |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28359049 |
aaaatcaatcaaagcaagcaccaaagcatgcttcgtctaattaaatctctcttatttgcaattgaaaaacactattccc |
28358971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 511 - 561
Target Start/End: Complemental strand, 43457231 - 43457181
Alignment:
| Q |
511 |
gaacaattgaaaagctagaattgcacccaaatccattaaatcaagaaaaaa |
561 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| || |||||| |
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| T |
43457231 |
gaacaattgaaaagctagaattgcaaccaaatccattaaataaataaaaaa |
43457181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 3500859 - 3500529
Alignment:
| Q |
8 |
ccaagaatatcaagttacatccaaattcaattaaaatttattcataataccaaaattatccttactcgtttccttcccactcttatgaatgatacgtgat |
107 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
3500859 |
ccaaaaatatcaagttacacccaaattcaattaaaatttattcataataacaaaattatccttactcatttccttcccactcttatgaatgatacatgat |
3500760 |
T |
|
| Q |
108 |
tttaattcacgttaggtaaattaagtatatgtgatctgaattcacgtgataaaacaacaacctcaaaatc---cacctgatacatgattcctttgttgct |
204 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
3500759 |
tttaattcacgttaggtaaattaagtatacgtgatctgaattcacgtgataaaacaacaacctcaaaatccaccacctgatacatgattcatttgttgcc |
3500660 |
T |
|
| Q |
205 |
tgcatctacactgtcttcacacagccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaac |
304 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
3500659 |
tgcatctacactgtcttcacacaaccatggatgatgatttccaccaaccaacaatatgaactatcatggaggatgcaattgcgaactatcagtgtgaaac |
3500560 |
T |
|
| Q |
305 |
cctctcaaaggcaaacaccaaagcatataag |
335 |
Q |
| |
|
| ||||||| ||||||||||||||||||||| |
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|
| T |
3500559 |
cttctcaaatgcaaacaccaaagcatataag |
3500529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 502 - 588
Target Start/End: Complemental strand, 3500364 - 3500279
Alignment:
| Q |
502 |
cttatgtccgaacaattgaaaagctagaattgcacccaaatccattaaatcaagaaaaaacaatctttagtttgaaaactaaaattt |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
3500364 |
cttatgtccgaacaattgaaaagctagaattgcacccaaatccattaaatcaagaaaaaa-aatcttaagtttgaaaactaaaattt |
3500279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 379 - 457
Target Start/End: Complemental strand, 3500486 - 3500408
Alignment:
| Q |
379 |
aaaatcaatcaaagcaagcaccaaagcatgcttcgtctaattaaatctctcttatttgcaattgaaaaacactattccc |
457 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3500486 |
aaaatcaatcaaagcaagcaccaaaacatgcttcgtctaattaaatctctcttatttgcaattgaaaaacactattccc |
3500408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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