View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_60 (Length: 349)
Name: NF1643_low_60
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 48961945 - 48962199
Alignment:
| Q |
19 |
ggtttgtgatatatggttcatactccttatttgtttattgaaatagcgatgttttgaaataaatttgtaactctgataatgttgtttatgtttgttctga |
118 |
Q |
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| T |
48961945 |
ggtttgtgatatatggttcatactccttatttgtttattgaaatagcgatgttttgaaataaatttgtaactccgataatgttgtttatgtttgttctga |
48962044 |
T |
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| Q |
119 |
ttgaaaattgtgttttgttcaagttgatgtaattattcaaatactatgagactaaagcctttattccttacctatcatttttagcatattaatattccag |
218 |
Q |
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| T |
48962045 |
ttgaaaattgtgttttgttcaagttgatgtaattattcaaatactatgagactaaagcctttattccttacctatcatttttagcatattaatattccag |
48962144 |
T |
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| Q |
219 |
actcattttagacctttcatttaggccaatatatgcttgggtagcctagccagca |
273 |
Q |
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| T |
48962145 |
actcattttagacctttcatttaggccaatatatgcttgggtagcctagccagca |
48962199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 286 - 328
Target Start/End: Original strand, 48962260 - 48962302
Alignment:
| Q |
286 |
tttggaaatgaaagaaaactggaacaggaactaagagaaacta |
328 |
Q |
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| T |
48962260 |
tttggaaatgaaagaaaactggaacaggaagtaagagaaacta |
48962302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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