View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_63 (Length: 347)
Name: NF1643_low_63
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 3 - 330
Target Start/End: Original strand, 3664410 - 3664737
Alignment:
| Q |
3 |
ctccggttatttcaaaccgccttatctcgccaggcaagaatatctcgccatggcgagctctgaacataaaaaacatggcttctggaatcacttctcgccc |
102 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3664410 |
ctccagttattccaaaccgccttatctcgccaggcaagaatatctcgccatggtgagctctgaacataaaaaacatggcttctggaatcacttctcgccc |
3664509 |
T |
|
| Q |
103 |
tcttgctcgccctttccttgctatggcgacatctcactcccgttgtggcgagctatggtgcgagcaggatggtgacatatactggaattcattcccgcca |
202 |
Q |
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|||||||||||||| |||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3664510 |
tcttgctcgcccttcccttgctatggcgacatctcactctcgctgtggtgagctatggtgcgagcaggatggtgacatatactggaattcattcccgcca |
3664609 |
T |
|
| Q |
203 |
tggcgtcatatgtcactatggtgatatggcctttgctcctcttttgattttccttctttaattcttgtcttgttcactcttttcctggtttttccttgga |
302 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3664610 |
tggcgacatatgtaactatggtgatatggcctttgctcctcttttgattttccttctttaattcttgtattgttcactcttttcctggtttttccttgga |
3664709 |
T |
|
| Q |
303 |
taatttgtggaacaagtaaccaaaagtg |
330 |
Q |
| |
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||||||||||||||||||| |||||||| |
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| T |
3664710 |
taatttgtggaacaagtaatcaaaagtg |
3664737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 289
Target Start/End: Original strand, 34739046 - 34739298
Alignment:
| Q |
45 |
tctcgccatggcgagctctgaacataaaaaacatggcttctggaatcacttctcgccctcttgctcgc---cctttcctt-gctatggcgacatctcact |
140 |
Q |
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|||||||||||||| |||| ||| | ||||||||| ||||||| ||||||||||||| ||||||| ||||| || |||||||||||||||| || |
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| T |
34739046 |
tctcgccatggcgacctcttaacctccgaaacatggcctctggaactacttctcgccctcctgctcgctcgcctttggttcgctatggcgacatctcgct |
34739145 |
T |
|
| Q |
141 |
cc------cgttgtggcgagctatggtgcgagcaggatggtgacatatactggaattcattcccgccatggcgtcatatgtcactatggtgatatggcct |
234 |
Q |
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|| ||||||||||| |||||||| ||||| |||||| |||||| ||||||||||||||||| |||| || || ||| | | | || |
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| T |
34739146 |
ttttggttcgctgtggcgagcttgagtgcgagctggatgctgacatt--ctggaactcattcccgccatggcgatatatttcgctgtggcaagttagtct |
34739243 |
T |
|
| Q |
235 |
ttgctcctcttttgattttccttctttaattcttgtcttgttcactcttttcctg |
289 |
Q |
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||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| |
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| T |
34739244 |
ttgctcctcttttaattttctttctttgattcttgtcttgttcactcttttcctg |
34739298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 8880761 - 8880636
Alignment:
| Q |
12 |
tttcaaaccgccttatctcgccaggcaagaatatctcgccatggcgagctctgaacataaaaaacatggcttctggaatcacttctcgccctcttgctcg |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | ||||||||||||||||| ||| | | |||||||| ||||||| |||||||||||| ||||||| |
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| T |
8880761 |
tttcaaaccgccttatctcgccagacaagattttctcgccatggcgagctatgatcctctgaaacatggtctctggaactacttctcgcccttttgctcg |
8880662 |
T |
|
| Q |
112 |
ccctttcctt-gctatggcgacatctc |
137 |
Q |
| |
|
||||||||| |||||||||| ||||| |
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| T |
8880661 |
-cctttccttcgctatggcgaaatctc |
8880636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 25692896 - 25692977
Alignment:
| Q |
50 |
ccatggcgagctctgaacataaaaaacatggcttctggaatcacttctcgccctcttgctcgccctttcctt-gctatggcga |
131 |
Q |
| |
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||||||||| |||||||| | |||||||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||||| |
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| T |
25692896 |
ccatggcgaactctgaacttcaaaaacatggtctctggaatcacttctcgccatcttgctcg-cctttccttcgctatggcga |
25692977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 25693006 - 25693112
Alignment:
| Q |
184 |
ctggaattcattcccgccatggcgtcatatgtcactatggtgatatggcctttgctcctcttttgat-tttccttctttaattcttgtcttgttcactct |
282 |
Q |
| |
|
|||||| |||||| |||||||| | || || || |||||| || || ||||||||||||| ||||| |||| |||||| ||||||||||||||| ||| |
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| T |
25693006 |
ctggaactcattcacgccatggtgacaaatttcgctatggcgaaatttcctttgctcctctattgatgtttctttctttcgttcttgtcttgttcattct |
25693105 |
T |
|
| Q |
283 |
tttcctg |
289 |
Q |
| |
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||||||| |
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| T |
25693106 |
tttcctg |
25693112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 207
Target Start/End: Original strand, 17864375 - 17864558
Alignment:
| Q |
28 |
ctcgccaggcaagaatatctcgccatggcgagctctgaacataaaaaacatggcttctggaa-tcacttctcgccctcttgctcgccctttccttgctat |
126 |
Q |
| |
|
||||||||| | |||| |||||||||||||| |||||| | | |||||||||| ||| ||| ||| || | ||||||||||||||||| ||| ||||| |
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| T |
17864375 |
ctcgccaggaaggaatttctcgccatggcgaactctgatcttcaaaaacatggtctctagaactcatttg-caccctcttgctcgcccttccctcgctat |
17864473 |
T |
|
| Q |
127 |
ggcgacatctcactc------ccgttgtggcgagctatggtgcgagcaggatggtgacatatactggaattcattcccgccatggcg |
207 |
Q |
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||||||||||| || || | ||||||||||||||| ||||| ||||||||| || ||||||| ||||||||| |||||| |
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| T |
17864474 |
ggcgacatctcggtctctggttcgctatggcgagctatggtgtgagcatgatggtgac--attctggaatccattcccgctatggcg |
17864558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 17864692 - 17864740
Alignment:
| Q |
281 |
cttttcctggtttttccttggataatttgtggaacaagtaaccaaaagt |
329 |
Q |
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|||||| |||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
17864692 |
cttttcatggtttttccttggataacttgtgaaacaagtaaccaaaagt |
17864740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 37438871 - 37438754
Alignment:
| Q |
20 |
cgccttatctcgccaggcaagaatatctcgccatggcgagctctgaacataaaaaacatggcttctggaa-tcacttctcgccctcttgctcgccctttc |
118 |
Q |
| |
|
||||||| || |||||| | ||| ||||||| |||| || ||| ||| | |||||||||| ||||||| ||| ||| | ||||||||||||||||||| |
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| T |
37438871 |
cgccttagcttgccaggtaggaaaatctcgcaatggagaactcaaaacttcaaaaacatggtctctggaactca-ttcacaccctcttgctcgccctttc |
37438773 |
T |
|
| Q |
119 |
cttgctatggcgacatctc |
137 |
Q |
| |
|
|| ||||||| |||||||| |
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| T |
37438772 |
ctcgctatggagacatctc |
37438754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 41456486 - 41456530
Alignment:
| Q |
16 |
aaaccgccttatctcgccaggcaagaata--tctcgccatggcga |
58 |
Q |
| |
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|||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
41456486 |
aaaccgccttatttcgccaggcaagaatatttctcgccatggcga |
41456530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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