View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_low_65 (Length: 345)

Name: NF1643_low_65
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_low_65
NF1643_low_65
[»] chr8 (2 HSPs)
chr8 (67-333)||(2613172-2613438)
chr8 (19-51)||(2613121-2613153)
[»] chr3 (2 HSPs)
chr3 (68-146)||(32010164-32010242)
chr3 (68-112)||(46358008-46358052)
[»] chr1 (6 HSPs)
chr1 (74-119)||(10605099-10605144)
chr1 (68-148)||(10785087-10785167)
chr1 (68-112)||(12636085-12636129)
chr1 (69-119)||(34159047-34159097)
chr1 (68-112)||(11439646-11439690)
chr1 (69-141)||(18844908-18844979)
[»] chr5 (3 HSPs)
chr5 (69-145)||(17853106-17853182)
chr5 (68-112)||(7194927-7194971)
chr5 (69-112)||(8297881-8297924)
[»] scaffold0002 (1 HSPs)
scaffold0002 (68-111)||(426554-426597)
[»] chr6 (2 HSPs)
chr6 (69-112)||(3880239-3880282)
chr6 (69-122)||(4043344-4043397)
[»] chr4 (4 HSPs)
chr4 (69-145)||(12296552-12296627)
chr4 (74-146)||(19814849-19814921)
chr4 (71-119)||(42719560-42719608)
chr4 (69-110)||(28377903-28377944)
[»] chr2 (5 HSPs)
chr2 (69-141)||(44594060-44594131)
chr2 (68-112)||(1269862-1269906)
chr2 (68-112)||(4975156-4975200)
chr2 (68-112)||(4993064-4993108)
chr2 (68-112)||(33533370-33533414)
[»] scaffold0119 (1 HSPs)
scaffold0119 (68-112)||(41796-41840)
[»] chr7 (4 HSPs)
chr7 (68-112)||(1321203-1321247)
chr7 (68-112)||(6726045-6726089)
chr7 (69-145)||(9427706-9427781)
chr7 (68-112)||(44755978-44756022)


Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 67 - 333
Target Start/End: Original strand, 2613172 - 2613438
Alignment:
Q  67 caaacaacaaattttatttaacaatcagatccctactcaagacgaatatagacggatcatttagagaatacaaactaaaaacttctaaaataagtccatc 166  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||||||||||||||||||||    
T  2613172 caaacagcaaattttatttaacaatcagatccctactcaagacgaatatagattggtcattcagagaatacaaactaaaaacttctaaaataagtccatc 2613271  T
Q  167 tgaaatagttaaattatgaaagatccaataatacaacctacagaattacagcaccaatctatatgaaagtataaccgattacaacaataggtcttagttc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2613272 tgaaatagttaaattatgaaagatccaataatacaacctacagaattacagcaccaatctatatgaaagtataaccgattacaacaataggtcttagttc 2613371  T
Q  267 tttgcatttacttgatcatggatggtagtaattgtggcaacaaggatcatcatatggcttatttttg 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2613372 tttgcatttacttgatcatggatggtagtaattgtggcaacaaggatcatcatatggcttatttttg 2613438  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 2613121 - 2613153
Alignment:
Q  19 taaataactcttaaacaaattaagtctgaaata 51  Q
    ||||||||||||||||||||||| |||||||||    
T  2613121 taaataactcttaaacaaattaaatctgaaata 2613153  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 32010242 - 32010164
Alignment:
Q  68 aaacaacaaattttatttaacaatcagatccctactcaagacgaatatagacggatcatttagagaatacaaactaaaa 146  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| | |||  | | ||| ||||||||||| ||||||    
T  32010242 aaacaacaaattttatttaacaaccagatccctactcaagacgaacagagatcggtgattcagagaatacaacctaaaa 32010164  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 46358008 - 46358052
Alignment:
Q  68 aaacaacaaattttatttaacaatcagatccctactcaagacgaa 112  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||    
T  46358008 aaacaacaaattttatttaacaaccagatccctgctcaagacgaa 46358052  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 10605144 - 10605099
Alignment:
Q  74 caaattttatttaacaatcagatccctactcaagacgaatatagac 119  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  10605144 caaattttatttaacaatcagatccctgctcaagacgaatagagac 10605099  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 10785087 - 10785167
Alignment:
Q  68 aaacaacaaattttatttaacaatcagatccctactcaagacgaatatagacggatcatttagagaatacaaactaaaaac 148  Q
    ||||| ||||||| ||||||||| ||||||||| ||||||||||||| |||||| | |    |||||||||||||||||||    
T  10785087 aaacatcaaatttcatttaacaaccagatccctgctcaagacgaatagagacgggtaaaactgagaatacaaactaaaaac 10785167  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 12636085 - 12636129
Alignment:
Q  68 aaacaacaaattttatttaacaatcagatccctactcaagacgaa 112  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||    
T  12636085 aaacaacaaattttatttaactatcgggtccctactcaagacgaa 12636129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 34159097 - 34159047
Alignment:
Q  69 aacaacaaattttatttaacaatcagatccctactcaagacgaatatagac 119  Q
    ||||||||| |||||| ||||||||||||||| |||||||| |||| ||||    
T  34159097 aacaacaaaatttattaaacaatcagatccctgctcaagacaaatagagac 34159047  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 11439646 - 11439690
Alignment:
Q  68 aaacaacaaattttatttaacaatcagatccctactcaagacgaa 112  Q
    ||||||||||||||||| ||||| |||||| || |||||||||||    
T  11439646 aaacaacaaattttattaaacaaccagatctctgctcaagacgaa 11439690  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 18844908 - 18844979
Alignment:
Q  69 aacaacaaattttatttaacaatcagatccctactcaagacgaatatagacggatcatttagagaatacaaac 141  Q
    |||||||||||||||| || || | ||||||||||||| ||||| |||||| ||| ||| ||| |||||||||    
T  18844908 aacaacaaattttattaaa-aaccggatccctactcaaaacgaacatagactgataattgagataatacaaac 18844979  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 17853106 - 17853182
Alignment:
Q  69 aacaacaaattttatttaacaatcagatccctactcaagacgaatatagacggatcatttagagaatacaaactaaa 145  Q
    ||||||||||||||||||| || ||||||||| ||||||| ||||||| || | | ||| ||| |||||||||||||    
T  17853106 aacaacaaattttatttaaaaaccagatccctgctcaagatgaatataaaccggtgattcagaaaatacaaactaaa 17853182  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 7194927 - 7194971
Alignment:
Q  68 aaacaacaaattttatttaacaatcagatccctactcaagacgaa 112  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||    
T  7194927 aaacagcaaattttattaaacaaccagatccctactcaagacgaa 7194971  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 112
Target Start/End: Complemental strand, 8297924 - 8297881
Alignment:
Q  69 aacaacaaattttatttaacaatcagatccctactcaagacgaa 112  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||    
T  8297924 aacagcaaattttattgaacaatcagatctctactcaagacgaa 8297881  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 426554 - 426597
Alignment:
Q  68 aaacaacaaattttatttaacaatcagatccctactcaagacga 111  Q
    ||||| |||||||||||||| |||||||||||||||||||||||    
T  426554 aaacagcaaattttatttaaaaatcagatccctactcaagacga 426597  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 3880239 - 3880282
Alignment:
Q  69 aacaacaaattttatttaacaatcagatccctactcaagacgaa 112  Q
    |||||||||||||||| ||||||||||||||| |||||||||||    
T  3880239 aacaacaaattttattaaacaatcagatccctgctcaagacgaa 3880282  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 4043344 - 4043397
Alignment:
Q  69 aacaacaaattttatttaacaatcagatccctactcaagacgaatatagacgga 122  Q
    |||| |||||||||||||| ||||| ||| || ||||||||||||| |||||||    
T  4043344 aacagcaaattttatttaaaaatcaaatctctgctcaagacgaataaagacgga 4043397  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 12296627 - 12296552
Alignment:
Q  69 aacaacaaattttatttaacaatcagatccctactcaagacgaatatagacggatcatttagagaatacaaactaaa 145  Q
    |||| |||||||||||||| || |||||| || ||||| ||||||| |||| ||| ||| |||||||||||||||||    
T  12296627 aacagcaaattttatttaa-aaccagatctctgctcaaaacgaatagagaccgatgattcagagaatacaaactaaa 12296552  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 19814849 - 19814921
Alignment:
Q  74 caaattttatttaacaatcagatccctactcaagacgaatatagacggatcatttagagaatacaaactaaaa 146  Q
    ||||||||||||||||| ||||||||| ||||||||||| | |||| ||| |   ||||| ||||||||||||    
T  19814849 caaattttatttaacaaccagatccctgctcaagacgaacagagaccgataaaacagagagtacaaactaaaa 19814921  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 42719608 - 42719560
Alignment:
Q  71 caacaaattttatttaacaatcagatccctactcaagacgaatatagac 119  Q
    |||||||||||||| |||||||| |||||| ||||||||||||| ||||    
T  42719608 caacaaattttattaaacaatcaaatccctgctcaagacgaatagagac 42719560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 28377944 - 28377903
Alignment:
Q  69 aacaacaaattttatttaacaatcagatccctactcaagacg 110  Q
    ||||||||||||||||||| || || ||||||||||||||||    
T  28377944 aacaacaaattttatttaaaaaccaaatccctactcaagacg 28377903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 44594131 - 44594060
Alignment:
Q  69 aacaacaaattttatttaacaatcagatccctactcaagacgaatatagacggatcatttagagaatacaaac 141  Q
    |||||||||||||| | || || ||||||||||||||| ||||| |||||| ||| ||| |||||||||||||    
T  44594131 aacaacaaattttaataaa-aaccagatccctactcaaaacgaacatagactgataattcagagaatacaaac 44594060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 1269906 - 1269862
Alignment:
Q  68 aaacaacaaattttatttaacaatcagatccctactcaagacgaa 112  Q
    |||||||||||||||||||||||||| ||| ||  ||||||||||    
T  1269906 aaacaacaaattttatttaacaatcaaatctctgttcaagacgaa 1269862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 4975200 - 4975156
Alignment:
Q  68 aaacaacaaattttatttaacaatcagatccctactcaagacgaa 112  Q
    ||||||||||||||||||||| ||||| || || |||||||||||    
T  4975200 aaacaacaaattttatttaaccatcaggtctctgctcaagacgaa 4975156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 4993108 - 4993064
Alignment:
Q  68 aaacaacaaattttatttaacaatcagatccctactcaagacgaa 112  Q
    ||||||||||||||||||||| ||||| || || |||||||||||    
T  4993108 aaacaacaaattttatttaaccatcaggtctctgctcaagacgaa 4993064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 33533370 - 33533414
Alignment:
Q  68 aaacaacaaattttatttaacaatcagatccctactcaagacgaa 112  Q
    ||||||||||||||||||||||  |||||| || |||||||||||    
T  33533370 aaacaacaaattttatttaacagccagatctctgctcaagacgaa 33533414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 41796 - 41840
Alignment:
Q  68 aaacaacaaattttatttaacaatcagatccctactcaagacgaa 112  Q
    |||||||||||||||||||||||||| ||| ||  ||||||||||    
T  41796 aaacaacaaattttatttaacaatcaaatctctgttcaagacgaa 41840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 1321247 - 1321203
Alignment:
Q  68 aaacaacaaattttatttaacaatcagatccctactcaagacgaa 112  Q
    ||||||||||||||||| ||||| || ||| ||||||||||||||    
T  1321247 aaacaacaaattttattaaacaaccacatctctactcaagacgaa 1321203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 6726045 - 6726089
Alignment:
Q  68 aaacaacaaattttatttaacaatcagatccctactcaagacgaa 112  Q
    ||||||||||||||||| ||||| |||||| || |||||||||||    
T  6726045 aaacaacaaattttattaaacaaccagatctctgctcaagacgaa 6726089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 9427706 - 9427781
Alignment:
Q  69 aacaacaaattttatttaacaatcagatccctactcaagacgaatatagacggatcatttagagaatacaaactaaa 145  Q
    |||||||||||| |||||| || ||||||| | ||||||||||| | |||  | | |||||||||||||||||||||    
T  9427706 aacaacaaattt-atttaaaaaccagatccttgctcaagacgaacagagatcggtgatttagagaatacaaactaaa 9427781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 44756022 - 44755978
Alignment:
Q  68 aaacaacaaattttatttaacaatcagatccctactcaagacgaa 112  Q
    ||||||||||||||||| |||||  |||||||| |||||||||||    
T  44756022 aaacaacaaattttattaaacaactagatccctgctcaagacgaa 44755978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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