View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_low_71 (Length: 329)

Name: NF1643_low_71
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_low_71
NF1643_low_71
[»] chr5 (7 HSPs)
chr5 (17-319)||(24318774-24319095)
chr5 (20-105)||(19054649-19054734)
chr5 (39-112)||(18829526-18829599)
chr5 (21-108)||(25404882-25404969)
chr5 (36-112)||(25570968-25571044)
chr5 (17-110)||(24263609-24263702)
chr5 (20-105)||(16783213-16783299)
[»] chr6 (4 HSPs)
chr6 (17-105)||(21842917-21843005)
chr6 (17-107)||(9869716-9869805)
chr6 (20-112)||(11176157-11176249)
chr6 (32-76)||(21034191-21034235)
[»] chr3 (4 HSPs)
chr3 (23-229)||(16227574-16227790)
chr3 (17-112)||(3399658-3399753)
chr3 (22-112)||(12769702-12769792)
chr3 (32-80)||(34274997-34275045)
[»] chr2 (1 HSPs)
chr2 (21-112)||(28923071-28923162)
[»] chr8 (6 HSPs)
chr8 (21-111)||(14998361-14998452)
chr8 (20-105)||(24720781-24720866)
chr8 (20-220)||(26828077-26828289)
chr8 (46-105)||(25232222-25232281)
chr8 (34-105)||(21327903-21327974)
chr8 (40-112)||(28858087-28858159)
[»] chr7 (2 HSPs)
chr7 (20-76)||(8315585-8315641)
chr7 (15-76)||(1587040-1587101)
[»] scaffold0008 (1 HSPs)
scaffold0008 (149-199)||(232607-232657)
[»] chr4 (2 HSPs)
chr4 (36-109)||(9055510-9055583)
chr4 (32-76)||(12609457-12609501)


Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 24319095 - 24318774
Alignment:
Q  17 agtgcttcttttcattcattagcttgacgaaataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaacttgtgc---- 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||        
T  24319095 agtgcttcttttcattcattagcttgacgaaataggttgcctcctattcagcgcgtgtttagcgtcccgagcctgacagatatgtctaacttgtgcttgg 24318996  T
Q  113 ---------accttcaggctccttgattttatcatcttcctcgaagtcatagtcttcatcaaatgggtatcctcttgcttcttcttcttcgatttttctt 203  Q
             |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24318995 gagctcatgaccttcaggctccttgatttcatcatcctcctcgaagtcatagtcttcatcagatgggtatcctcttgcttcttcttcttcgatttttctt 24318896  T
Q  204 cgggcataatcatctaccactcctttgac------ccattcgaatatttgacttgcatcatattctgagtaagtcacaacaaacacatcatataactttg 297  Q
    |||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24318895 cgggcataatcatctaccactcctttgacaagtctccattcgaatatttgacttgcatcatattctgagtaagtcacaacaaacacatcatataactttg 24318796  T
Q  298 acgttcttatggtagtttccct 319  Q
    ||||||||||||||||||||||    
T  24318795 acgttcttatggtagtttccct 24318774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 19054649 - 19054734
Alignment:
Q  20 gcttcttttcattcattagcttgacgaaataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaa 105  Q
    ||||||||| | |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||| |||| |||||    
T  19054649 gcttcttttaagtcattagcttaacgaaataggttgcctcctattcaccgcgtgtttagcgtcccgagcctgacaaatatctctaa 19054734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 18829526 - 18829599
Alignment:
Q  39 cttgacgaaataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaacttgtgc 112  Q
    |||||| ||||||||||  |||||||||||||||||||||||| | |||||||||  |||||||||||||||||    
T  18829526 cttgacaaaataggttgtttcctattcagcgcgtgtttagcgtcctgagcctgacgtatatgtctaacttgtgc 18829599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 25404969 - 25404882
Alignment:
Q  21 cttcttttcattcattagcttgacgaaataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaactt 108  Q
    |||||||| | |||||| |||||| ||||||||||| ||||||| || |||||||||| || || |||||||| ||||||||||||||    
T  25404969 cttcttttgagtcattaacttgacaaaataggttgcatcctatttagtgcgtgtttagagtccctagcctgacggatatgtctaactt 25404882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 25571044 - 25570968
Alignment:
Q  36 tagcttgacgaaataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaacttgtgc 112  Q
    |||||| ||||||||||||||||| ||||||||||||||||  |||   | |||||||| |||||||||||||||||    
T  25571044 tagcttaacgaaataggttgcctcttattcagcgcgtgttttacgtcttgggcctgacatatatgtctaacttgtgc 25570968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 24263609 - 24263702
Alignment:
Q  17 agtgcttcttttcattcattagcttgacgaaataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaacttgt 110  Q
    ||||||||||||   ||| |||||||||||||||||||| || |||||||||| ||||||  | |  | ||| ||||||| |||||||||||||    
T  24263609 agtgcttcttttaggtcactagcttgacgaaataggttgtcttctattcagcgtgtgttttacatctcaagcatgacagagatgtctaacttgt 24263702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 16783299 - 16783213
Alignment:
Q  20 gcttcttttcattcattagcttgacgaaa-taggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaa 105  Q
    ||||||||| | ||||||||| ||| ||| ||||||| ||||||||||  | ||||||||||| || || ||||| |||||||||||    
T  16783299 gcttcttttaagtcattagctagacaaaaataggttgtctcctattcaatgtgtgtttagcgtcccaagtctgacggatatgtctaa 16783213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 21843005 - 21842917
Alignment:
Q  17 agtgcttcttttcattcattagcttgacgaaataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaa 105  Q
    |||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  21843005 agtgcttcttttgagtcattagcttgacaaaataggttgcctcctattcagcgcgtgtttagcgtcccgagcctgacggatatgtctaa 21842917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 9869805 - 9869716
Alignment:
Q  17 agtgcttcttttcattcattagcttgacgaaataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaact 107  Q
    ||||||| |||| | |||||| ||||||||||||||||||||| |||||| | | | |||||||| || |||||||| |||||||||||||    
T  9869805 agtgcttattttaagtcattatcttgacgaaataggttgcctcttattcaacac-tatttagcgtccctagcctgacggatatgtctaact 9869716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 11176249 - 11176157
Alignment:
Q  20 gcttcttttcattcattagcttgacgaaataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaacttgtgc 112  Q
    ||||||||| | || ||||||||||| ||||||||| |||||||| ||||||| |||   ||   |||| |||||||||||||||||||||||    
T  11176249 gcttcttttgagtccttagcttgacggaataggttgtctcctattgagcgcgttttttatgtcatgagcttgacagatatgtctaacttgtgc 11176157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 21034191 - 21034235
Alignment:
Q  32 tcattagcttgacgaaataggttgcctcctattcagcgcgtgttt 76  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||    
T  21034191 tcattagcttgacaaaataggttgcctcttattcagcgcatgttt 21034235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 16227574 - 16227790
Alignment:
Q  23 tcttttcattcattagcttgacgaaataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaacttgtgc---------- 112  Q
    |||||| | ||||| |||||||||||||||||  ||||||||||||||||||||||||| || | | ||||| ||||||||||||||| |              
T  16227574 tctttttagtcattggcttgacgaaataggttttctcctattcagcgcgtgtttagcgtcccaaacttgacaaatatgtctaacttgtacttgggagccc 16227673  T
Q  113 ---accttcaggctccttgattttatcatcttcctcgaagtcatagtcttcatcaaatgggtatcctcttgcttcttcttcttcgatttttcttcgggca 209  Q
       ||||| |||||| |||||||   | || |||||||||||||||||||||||  | ||||||||| | ||||| |||||||||| |||||| ||||||    
T  16227674 ctaacctttaggctctttgattt---cttcgtcctcgaagtcatagtcttcatctgaagggtatcctttagcttcctcttcttcgagttttctgcgggca 16227770  T
Q  210 taatcatctaccactccttt 229  Q
    |||||||||| |||||||||    
T  16227771 taatcatctagcactccttt 16227790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 3399753 - 3399658
Alignment:
Q  17 agtgcttcttttcattcattagcttgacgaaataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaacttgtgc 112  Q
    ||||||||||||   ||| |||||||||||||||| ||| |||||||||| |||||||||  |||  ||||||||||| |||||||||||||||||    
T  3399753 agtgcttcttttaggtcactagcttgacgaaatagtttgtctcctattcatcgcgtgttttacgtctcgagcctgacatatatgtctaacttgtgc 3399658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 12769792 - 12769702
Alignment:
Q  22 ttcttttcattcattagcttgacgaaataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaacttgtgc 112  Q
    ||||||| | |||||||||||| ||||||||||| |||||||||| | | ||||| |||| |||||||||||| |||||||||| ||||||    
T  12769792 ttcttttgagtcattagcttgatgaaataggttgtctcctattcaacacttgttttgcgtcccgagcctgacatatatgtctaatttgtgc 12769702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 34275045 - 34274997
Alignment:
Q  32 tcattagcttgacgaaataggttgcctcctattcagcgcgtgtttagcg 80  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34275045 tcattagcttgacgaaataggttgcctcctattccgcgcgtgtttagcg 34274997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 28923071 - 28923162
Alignment:
Q  21 cttcttttcattcattagcttgacgaaataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaacttgtgc 112  Q
    |||||||| | ||||||||||||||||||||||||||||||| || | ||||||||||||| |||||||| ||||||| |||||||||||||    
T  28923071 cttctttttagtcattagcttgacgaaataggttgcctcctactcggtgcgtgtttagcgtcccgagccttacagataggtctaacttgtgc 28923162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 14998361 - 14998452
Alignment:
Q  21 cttcttttcattcattagcttgacgaaa-taggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaacttgtg 111  Q
    |||||||| | ||||||||||||||||| |||||||||||||||||| |||||||||||| | ||||||||||| | |||||||||||||||    
T  14998361 cttcttttgagtcattagcttgacgaaaataggttgcctcctattcaacgcgtgtttagcatcccgagcctgacggttatgtctaacttgtg 14998452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 24720866 - 24720781
Alignment:
Q  20 gcttcttttcattcattagcttgacgaaataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaa 105  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| ||  ||||||||||    
T  24720866 gcttcttttgagtcattagcttgacgaaataagttgcctcctattcagcgcgtgtttagcgtcccgaacctaacgaatatgtctaa 24720781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 26828289 - 26828077
Alignment:
Q  20 gcttcttttcattcattagcttgacga-aataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagata-tgtctaacttgtgc----- 112  Q
    ||||||||| |  |||||||||||||| ||||||||| |||||||||| || ||||||||||| |||||||||||| ||| ||||||||||||||         
T  26828289 gcttcttttgagccattagcttgacgataataggttgtctcctattcaacgtgtgtttagcgtcccgagcctgacatatattgtctaacttgtgctaggg 26828190  T
Q  113 --------accttcaggctccttgattttatcatcttcctcgaagtcatagtcttcatcaaatgggtatcctcttgcttcttcttcttcgatttttcttc 204  Q
             ||||| |||||||||| | |||  || ||||||||||||||||| |||||  |||| || ||||||||||| |||||||||||||| | |     
T  26828189 agcccctgcccttctggctccttga-tctat--tcctcctcgaagtcatagtcgtcatcttatggataccctcttgcttcatcttcttcgattttccatt 26828093  T
Q  205 gggcataatcatctac 220  Q
    |||||||| |||||||    
T  26828092 gggcataagcatctac 26828077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 25232222 - 25232281
Alignment:
Q  46 aaataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaa 105  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||  |||||||||||    
T  25232222 aaataggttgcctcctattcagcgcgtgtttagcgtcccgagcttgaaggatatgtctaa 25232281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 21327903 - 21327974
Alignment:
Q  34 attagcttgacgaaataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaa 105  Q
    ||||||||||| ||||||||| |||||||||||| |  |||||||||| |||| ||||||  ||||||||||    
T  21327903 attagcttgacaaaataggtttcctcctattcagtgtttgtttagcgtcccgaccctgacgaatatgtctaa 21327974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 28858087 - 28858159
Alignment:
Q  40 ttgacgaaataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaacttgtgc 112  Q
    ||||||||||||||||||||||||||| |  ||||||  | |  ||||||||||  |||||||||||||||||    
T  28858087 ttgacgaaataggttgcctcctattcaacatgtgttttacatctcgagcctgacgaatatgtctaacttgtgc 28858159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 8315641 - 8315585
Alignment:
Q  20 gcttcttttcattcattagcttgacgaaataggttgcctcctattcagcgcgtgttt 76  Q
    ||||||||| | |||||||||| | |||||||||||||||||||| ||| |||||||    
T  8315641 gcttcttttaagtcattagcttaaagaaataggttgcctcctatttagcccgtgttt 8315585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 1587040 - 1587101
Alignment:
Q  15 ttagtgcttcttttcattcattagcttgacgaaataggttgcctcctattcagcgcgtgttt 76  Q
    |||| ||||||||| | | | |||||||||| |||||||||||||||||||| || ||||||    
T  1587040 ttagagcttcttttaagttactagcttgacggaataggttgcctcctattcaacgtgtgttt 1587101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 232607 - 232657
Alignment:
Q  149 gtcatagtcttcatcaaatgggtatcctcttgcttcttcttcttcgatttt 199  Q
    |||||||||||||||  ||||||| ||||||||| | ||||||||||||||    
T  232607 gtcatagtcttcatctgatgggtaccctcttgctccctcttcttcgatttt 232657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 9055510 - 9055583
Alignment:
Q  36 tagcttgacgaaataggttgcctcctattcagcgcgtgtttagcgttccgagcctgacagatatgtctaacttg 109  Q
    ||||||||||||||| |||||||| ||||||| || |||||   ||  ||||||||||| |||| |||||||||    
T  9055510 tagcttgacgaaataagttgcctcttattcagggcatgttttatgtctcgagcctgacatatatatctaacttg 9055583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 12609457 - 12609501
Alignment:
Q  32 tcattagcttgacgaaataggttgcctcctattcagcgcgtgttt 76  Q
    |||||||||| |||||||||||| | ||||||||||||| |||||    
T  12609457 tcattagctttacgaaataggttacatcctattcagcgcttgttt 12609501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University