View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_75 (Length: 326)
Name: NF1643_low_75
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_75 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 6 - 310
Target Start/End: Original strand, 38547750 - 38548054
Alignment:
| Q |
6 |
cagagatatatagtgtcaaagaaaaggaccacaaagaaacctccattccgacctatccacttcatggtcactgtcttaggtttcaatataagtcacaaaa |
105 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38547750 |
cagacatatatagtgtcaaagaaaaggaccacaaagaaacctccattccgacctatccacttcatggtcactgtcttaggtttaaatataagtcacaaaa |
38547849 |
T |
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| Q |
106 |
agattgtgagtatttgattttttagtaggannnnnnnagcaatgatattttgtatcaaatcaataataaaactagtactaatagatcatgactattactt |
205 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38547850 |
agattgtgagtatttgattttttagtaggatttttttagcaatgatattttgtatcaaatcaataataaaactactactaatagatcatgactattactt |
38547949 |
T |
|
| Q |
206 |
aacgattaaatgtatcattctaagtcccggtaaacttagctcagttgtcatggacaaatggataatatatgcaggggcgggggttcgaatcccaaattaa |
305 |
Q |
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| T |
38547950 |
aacgattaaatgtatcattctaagtcccgataaacttaactcagttgtcagggacaaatgcataatatatgcagggacgggggttcgaaccccaaattaa |
38548049 |
T |
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| Q |
306 |
gatat |
310 |
Q |
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||||| |
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| T |
38548050 |
gatat |
38548054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 47440873 - 47440819
Alignment:
| Q |
240 |
cttagctcagttgtcatggacaaatggataatatatgcaggggcgggggttcgaa |
294 |
Q |
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| T |
47440873 |
cttagctcagttggtagggacaaatgcataatatatgcaggggtcggggttcgaa |
47440819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 20101714 - 20101661
Alignment:
| Q |
241 |
ttagctcagttgtcatggacaaatggataatatatgcaggggcgggggttcgaa |
294 |
Q |
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| T |
20101714 |
ttagatcagttggtatggacaaatgcatattatatgcaggggccggggttcgaa |
20101661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 6734813 - 6734743
Alignment:
| Q |
228 |
agtcccggtaaacttagctcagttgtcatggacaaatggataatatatgcaggggcgggggttcgaatccc |
298 |
Q |
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| T |
6734813 |
agtccctgtgaacttagctcagttggtagggacaaatgcataatatatgtaggggccgggtttcgaatccc |
6734743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 3821495 - 3821426
Alignment:
| Q |
229 |
gtcccggtaaacttagctcagttgtcatggacaaatggataatatatgcaggggcgggggttcgaatccc |
298 |
Q |
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| T |
3821495 |
gtccccgtaagctttgctcagttggtagggacaaatgcattttatatgcaggggccggggttcgaatccc |
3821426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 49308808 - 49308878
Alignment:
| Q |
223 |
ttctaagtcccggtaaacttagctcagttgtcatggacaaatggataatatatgcaggggcgggggttcgaa |
294 |
Q |
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| T |
49308808 |
ttctaagtccccgtaagcttagctcagttgacaaggac-aatgcataatatatgcaaggtctggggttcgaa |
49308878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 45665093 - 45665033
Alignment:
| Q |
241 |
ttagctcagttgtcatggacaaatggataatatatgcaggggcgggggttcgaatcccaaa |
301 |
Q |
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|||||||||||| | ||||||||| ||||||||||||||| | || ||||||| |||||| |
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| T |
45665093 |
ttagctcagttggtagggacaaatgcataatatatgcagggaccggtgttcgaaccccaaa |
45665033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 14583204 - 14583258
Alignment:
| Q |
240 |
cttagctcagttgtcatggacaaatggataatatatgcaggggcgggggttcgaa |
294 |
Q |
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|||| |||||||| | ||||||||| ||||||||||||||||| |||||||||| |
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| T |
14583204 |
cttaactcagttggtagggacaaatgcataatatatgcaggggctggggttcgaa |
14583258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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