View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_low_8 (Length: 589)

Name: NF1643_low_8
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_low_8
NF1643_low_8
[»] chr1 (6 HSPs)
chr1 (20-582)||(33856955-33857525)
chr1 (20-582)||(33923398-33923968)
chr1 (217-487)||(47872396-47872674)
chr1 (217-334)||(49547324-49547446)
chr1 (377-407)||(44261733-44261763)
chr1 (534-570)||(47872307-47872343)
[»] chr3 (3 HSPs)
chr3 (529-570)||(14961558-14961599)
chr3 (186-224)||(487266-487304)
chr3 (183-215)||(14961823-14961855)
[»] chr5 (1 HSPs)
chr5 (349-401)||(31264611-31264663)


Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 20 - 582
Target Start/End: Complemental strand, 33857525 - 33856955
Alignment:
Q  20 agaagagagatggagcaaaactaaacttcaacagaggaagaaccttggatggtttggagaagttttgttgtgagatgaattcttcttttagttgatgttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33857525 agaagagagatggagcaaaactaaacttcaacagaggaagaaccttggatggtttggagaagttttgttgtgagatgaattcttcttttagttgatgttt 33857426  T
Q  120 atttaattgtagagttcccggaatattttacggttgtaagacaaatgttatcggtggacatactggacattagattcccaaggacataaaatgcatgaac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33857425 atttaattgtagagttcccggaatattttacggttgtaagacaaatgttatcggtggacatactggacattagtttcccaaggacataaaatgcatgaac 33857326  T
Q  220 ccctattttaataatccaaagatatagacttcatcagttcatta---cgtggaaaaattctatcatcaattagttt---ttcttcaacaatgcagtgtgt 313  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    ||| ||||||||||||||||||||||||   |||||||||||||||||||||    
T  33857325 ccctattttaatactccaaagatatagacttcatcagttcattaacgtgtgaaaaaattctatcatcaattagtttttcttcttcaacaatgcagtgtgt 33857226  T
Q  314 cacaacttaatccatcaattagtaacctaatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaagattaaacaatttaaatgtcata 413  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33857225 cacaacttaatccatcaattagt-ttttaatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaagattaaacaatttaaatgtcata 33857127  T
Q  414 catacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcggcatatggtagaaccatggc--atatatatagcaagc-n 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||      
T  33857126 catacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcagcatatggtagaaccatggcatatatatatagcaagcaa 33857027  T
Q  511 nnnnnncggcagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctca 582  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33857026 aaaaaacggcagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctca 33856955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 20 - 582
Target Start/End: Original strand, 33923398 - 33923968
Alignment:
Q  20 agaagagagatggagcaaaactaaacttcaacagaggaagaaccttggatggtttggagaagttttgttgtgagatgaattcttcttttagttgatgttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33923398 agaagagagatggagcaaaactaaacttcaacagaggaagaaccttggatggtttggagaagttttgttgtgagatgaattcttcttttagttgatgttt 33923497  T
Q  120 atttaattgtagagttcccggaatattttacggttgtaagacaaatgttatcggtggacatactggacattagattcccaaggacataaaatgcatgaac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33923498 atttaattgtagagttcccggaatattttacggttgtaagacaaatgttatcggtggacatactggacattagtttcccaaggacataaaatgcatgaac 33923597  T
Q  220 ccctattttaataatccaaagatatagacttcatcagttcatta---cgtggaaaaattctatcatcaattagttt---ttcttcaacaatgcagtgtgt 313  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    ||| ||||||||||||||||||||||||   |||||||||||||||||||||    
T  33923598 ccctattttaatactccaaagatatagacttcatcagttcattaacgtgtgaaaaaattctatcatcaattagtttttcttcttcaacaatgcagtgtgt 33923697  T
Q  314 cacaacttaatccatcaattagtaacctaatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaagattaaacaatttaaatgtcata 413  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33923698 cacaacttaatccatcaattagt-ttttaatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaagattaaacaatttaaatgtcata 33923796  T
Q  414 catacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcggcatatggtagaaccatggc--atatatatagcaagc-n 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||      
T  33923797 catacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcagcatatggtagaaccatggcatatatatatagcaagcaa 33923896  T
Q  511 nnnnnncggcagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctca 582  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33923897 aaaaaacggcagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctca 33923968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 217 - 487
Target Start/End: Complemental strand, 47872674 - 47872396
Alignment:
Q  217 aacccctattttaataatccaaagatatagacttcatcagttcattacgtggaaaaattctatcatcaattagtttttcttcaacaatgcagtgtgtcac 316  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||| ||  ||| |||||||||| ||  ||  |||||||||||||||| |||||||    
T  47872674 aacccctattttaatactccaaagatatagactccatcagttcattacatgacaaatttctatcatcgat--gtagttcttcaacaatgcagagtgtcac 47872577  T
Q  317 aacttaatccatcaattagt----aacctaatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaagattaaacaatttaaat----- 407  Q
    ||||||||||||||| | ||    ||  | |||||||||||||||||||||||||||| |    || ||||||||||||||| ||||| ||||||         
T  47872576 aacttaatccatcaaattgtgcaaaatttcatcaaattagtctctaaattaggactccattacacttaatccaacaaagattgaacaaattaaatatgcc 47872477  T
Q  408 -gtcatacatacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcggcatatggtagaa 487  Q
      | ||| ||| |||| ||| |||||| ||||| |||||||| |||||||||||||||||||||| |||||||||||||||    
T  47872476 acttatatatataactagagaactaatgttatgttggatggcgacaaaccaaaaatcatggcattacggcatatggtagaa 47872396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 217 - 334
Target Start/End: Original strand, 49547324 - 49547446
Alignment:
Q  217 aacccctattttaataatccaaagatatagacttcatcagttcattacgtggaaaaattctatcatca---attagttt--ttcttcaacaatgcagtgt 311  Q
    |||||||||||||||| |||||||||||| ||| ||| ||||||||||||| ||||||||||||||||   || |||||  |||| ||||| ||||| ||    
T  49547324 aacccctattttaatactccaaagatataaactacattagttcattacgtgaaaaaattctatcatcactcatcagtttagttctccaacagtgcagagt 49547423  T
Q  312 gtcacaacttaatccatcaatta 334  Q
    | | |||||||||||||||||||    
T  49547424 gacccaacttaatccatcaatta 49547446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 44261733 - 44261763
Alignment:
Q  377 ctcaatccaacaaagattaaacaatttaaat 407  Q
    |||||||||||||||||||||||||||||||    
T  44261733 ctcaatccaacaaagattaaacaatttaaat 44261763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 534 - 570
Target Start/End: Complemental strand, 47872343 - 47872307
Alignment:
Q  534 catatgtgaagtgcaattaataatcataaactactaa 570  Q
    |||||| |||||||||| |||||||||||||||||||    
T  47872343 catatgagaagtgcaatgaataatcataaactactaa 47872307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 529 - 570
Target Start/End: Complemental strand, 14961599 - 14961558
Alignment:
Q  529 ataaacatatgtgaagtgcaattaataatcataaactactaa 570  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  14961599 ataaacatatgtgaaatgcaatgaataatcataaactactaa 14961558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 487266 - 487304
Alignment:
Q  186 acattagattcccaaggacataaaatgcatgaaccccta 224  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  487266 acattagtttcccatggacataaaatgcatgaaccccta 487304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 14961855 - 14961823
Alignment:
Q  183 tggacattagattcccaaggacataaaatgcat 215  Q
    |||||||||| ||||||||||||||||||||||    
T  14961855 tggacattagtttcccaaggacataaaatgcat 14961823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 31264663 - 31264611
Alignment:
Q  349 ttagtctctaaattaggactccgtctgtctcaatccaacaaagattaaacaat 401  Q
    |||||||  ||||||||||||| | ||||||| ||||||||||||| ||||||    
T  31264663 ttagtcttaaaattaggactccatttgtctcattccaacaaagattgaacaat 31264611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University