View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_low_83 (Length: 310)

Name: NF1643_low_83
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_low_83
NF1643_low_83
[»] chr4 (1 HSPs)
chr4 (18-310)||(2089682-2089974)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 2089682 - 2089974
Alignment:
Q  18 ccattgaattcgtagtagtagaaatatagaagatttctaaacttgaaaaatgcaactccaccataagagttaaaggacaagagttcgccattggtattaa 117  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2089682 ccattgaattcatagtagtagaaatatagaaggtttctaaacttgaaaaatgcaactccaccataagagttaaaggacaagaggtcgccattggtattaa 2089781  T
Q  118 gaatcaacaacttcctattcacttttcgatgaattgtgtgccatgtataagagctaacacccattgtaacacattcaacgagttcaaaacaaacaaaatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2089782 gaatcaacaacttcctattcacttttcgatgaattgtgtgccatgtataagagctaacacccattgtaacacattcaacgagttcaaaacaaacaaaatt 2089881  T
Q  218 tacacctctaaatgagaccaataagatcttgccatcttttagatttatctccctttgacaattatcaaaaacacaatcaggatgaagtattat 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2089882 tacacctctaaatgagaccaataagatcttgccatcttttagatttatctccctttgacaattatcaaaaacacaatcaggatgaagtgttat 2089974  T

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