View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_low_84 (Length: 309)

Name: NF1643_low_84
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_low_84
NF1643_low_84
[»] chr1 (1 HSPs)
chr1 (14-303)||(49684689-49684981)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 49684981 - 49684689
Alignment:
Q  14 aatatatttaaccgaaaatgaaccgccaaataaccaacaagtactagcaattcaacagcttgaacttgttcagtaatgcgttgtttttcttttcttatta 113  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  49684981 aatatatttaaccgaaaaagaaccgccaaataatcaacaagtactagcaattcaacggcttgaacttgttcagtaatgcattgtttttcttttcttatta 49684882  T
Q  114 agaaagtgcaaaactatgtatatcgtttttcatcttttaaaactaattccagtagtttcagtttctgatcaaattaagttaaagccaaaaccctaaagct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49684881 agaaagtgcaaaactatgtatatcgtttttcatcttttaaaactaattccagtagtttcagtttctgatcaaattaagttaaagccaaaaccctaaagct 49684782  T
Q  214 attatcatcaccaacagcaccactgctgaacatagagctacccgttacctc---ttctcctctagggacgactttcctttgctattacgaaca 303  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||   |||||||||||||||||||||||||||||||||||||||    
T  49684781 attatcatcaccaacagcaccactgctgaacatagagctaccctttacctcttcttctcctctagggacgactttcctttgctattacgaaca 49684689  T

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