View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_87 (Length: 301)
Name: NF1643_low_87
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_87 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 45109215 - 45108931
Alignment:
| Q |
1 |
caattggagacataaccaggaatggacgtctcaggaagcctaaacatctctttagagcgccgctgctggaaccaaaacatatatatctatgacttctaaa |
100 |
Q |
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| T |
45109215 |
caattggagacataaccaggaatggacgtctcaggaagcctaaacatctctttagagcgccgccgctggaaccaaaacttatatatctatgacttctaaa |
45109116 |
T |
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| Q |
101 |
gagaaactaaagaatactccatgtctagataattaattaaaaattcgagtaattaaggatagctaggatagcataatttagaattaactaaccttctgga |
200 |
Q |
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| T |
45109115 |
gggaaactaaagaatactccatgtctagataattaattaaaaattcgagtaattaaggatatctaggatagcataatttagaattaactaaccttctgga |
45109016 |
T |
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| Q |
201 |
aggcaacttttctgttattttttcttgatgaaaatggagataaatacaactcagagctccaatgaacatcatagggaatgtgaaa |
285 |
Q |
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| T |
45109015 |
aggcaacttttctgttattttttcttgatgaaaatggagataaatacaactcagagctccaatgaacatcatagggaatgtgaaa |
45108931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 45126052 - 45125956
Alignment:
| Q |
189 |
taaccttctggaaggcaacttttctgttattttttcttgatgaaaatggagataaatacaactcagagctccaatgaacatcatagggaatgtgaaa |
285 |
Q |
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| T |
45126052 |
taaccttgtggagggtaacttttgtgttgttttctcacgatgaagatggagatatatacaacccagagctccaatgaacatgatagggaatgtgaaa |
45125956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 45126200 - 45126116
Alignment:
| Q |
1 |
caattggagacataaccaggaatggacgtctcaggaagcctaaacatctctttagagcgccgctgctggaaccaaaacatatata |
85 |
Q |
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| T |
45126200 |
caattgtaggcatcaccaggaatggacgtctcaggaaacataaacatttttttagagcgccagtactgaaacaaaaacatatata |
45126116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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