View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_88 (Length: 300)
Name: NF1643_low_88
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_88 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 13854555 - 13854832
Alignment:
| Q |
8 |
tgaaatgaaaaatttagatatgtggaggaaggtttgccaacctagatgtaaagggggcctcggtgttagagatattagattggttaatgttagcctctta |
107 |
Q |
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| T |
13854555 |
tgaaatgaaaaatttagatatgtggaggaaggtttgccaacctagatgtaaagggggcctcggtgttagagatattagattggttaatgttagcctctta |
13854654 |
T |
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| Q |
108 |
gctaagtggtggtggcggctcctacaagatcaaccgtctttgtggaaagaggtgcttgaagatatttatggacctagggtgagttctaggaccatgatgg |
207 |
Q |
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| T |
13854655 |
gctaagtggtggtggcggctcctacaagatcaatcgtctttgtggaaagaggtgcttgaagatatttatggacctagggtgagttctaggaccatgatgg |
13854754 |
T |
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| Q |
208 |
tggggagaattggttggcttatgcttcaagatggtggaaagatttgatgagtttggaggaggtgggtagggttaggtg |
285 |
Q |
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| T |
13854755 |
tggggagaattggccggcttatgcttcaagatggtggaaagatttgatgagtttggaggaggtgggtagggttaggtg |
13854832 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 16663923 - 16663853
Alignment:
| Q |
30 |
tggaggaaggtttgccaacctagatgtaaagggggcctcggtgttagagatattagattggttaatgttag |
100 |
Q |
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| T |
16663923 |
tggaggaaggtgtgtcaacctagaggtaaaggtgggcttggtgtgagagacattaaattggttaatattag |
16663853 |
T |
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