View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_low_89 (Length: 298)

Name: NF1643_low_89
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_low_89
NF1643_low_89
[»] chr7 (4 HSPs)
chr7 (7-281)||(20381954-20382242)
chr7 (7-281)||(11292699-11292987)
chr7 (47-226)||(38993313-38993478)
chr7 (247-281)||(38993534-38993568)
[»] chr2 (3 HSPs)
chr2 (7-281)||(27206541-27206829)
chr2 (47-138)||(20374312-20374403)
chr2 (47-138)||(20434378-20434468)
[»] scaffold0041 (1 HSPs)
scaffold0041 (47-281)||(3609-3849)
[»] chr4 (3 HSPs)
chr4 (7-281)||(38500021-38500309)
chr4 (111-167)||(10706361-10706417)
chr4 (111-167)||(10920131-10920187)
[»] chr8 (5 HSPs)
chr8 (51-264)||(43848322-43848542)
chr8 (48-281)||(40263877-40264126)
chr8 (45-227)||(29042837-29043005)
chr8 (47-138)||(43855895-43855986)
chr8 (7-41)||(29043020-29043054)
[»] chr1 (8 HSPs)
chr1 (47-236)||(8983477-8983666)
chr1 (47-174)||(17122570-17122697)
chr1 (47-152)||(27534004-27534109)
chr1 (47-138)||(21488044-21488135)
chr1 (51-120)||(33065047-33065116)
chr1 (47-152)||(15318289-15318396)
chr1 (239-282)||(21492144-21492187)
chr1 (239-281)||(8983416-8983458)
[»] chr3 (4 HSPs)
chr3 (7-226)||(20952085-20952298)
chr3 (61-152)||(10303625-10303716)
chr3 (61-152)||(10287908-10287999)
chr3 (247-281)||(20951995-20952029)
[»] chr5 (1 HSPs)
chr5 (47-138)||(21027241-21027332)
[»] scaffold0111 (2 HSPs)
scaffold0111 (67-138)||(41462-41533)
scaffold0111 (239-282)||(45573-45616)
[»] scaffold0024 (1 HSPs)
scaffold0024 (8-41)||(160181-160214)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 20382242 - 20381954
Alignment:
Q  7 gaacataaaacagaaagaaaatagcagacataaaatta--------tttacgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtct 98  Q
    ||||||||||||||||||||| |||||||||||||  |        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20382242 gaacataaaacagaaagaaaacagcagacataaaaagaaacatctgtttacgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtct 20382143  T
Q  99 gaagattctgaggcaacaccgataactaaaccttgccttgtatcgaatgacccaaattcactagaaagtccgcacaggttcccaaaagatggaacctgtg 198  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20382142 gaagattttgaggcaacaccgataactaaaccttgccttgtatcgaatgacccaaattcactagaaagtccgcacaggttcccaaaagatggaacctgtg 20382043  T
Q  199 caaatgttaccattggctccaccaaaaataataaaaggat------ttcatttatcacctgaatttgatcctccctgagagcgggtttt 281  Q
    ||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  20382042 caaatgttaccattggctccaccaaaaataataaaaggatataaaattcatttatcacctgaatttgatcctccctgagagcgggtttt 20381954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 11292699 - 11292987
Alignment:
Q  7 gaacataaaacagaaagaaaatagcagacataaaatta--------tttacgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtct 98  Q
    ||||||||||||||||||||| | |||||||||||  |        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11292699 gaacataaaacagaaagaaaacaacagacataaaaagaaacatctgtttacgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtct 11292798  T
Q  99 gaagattctgaggcaacaccgataactaaaccttgccttgtatcgaatgacccaaattcactagaaagtccgcacaggttcccaaaagatggaacctgtg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11292799 gaagattctgaggcaacaccgataactaaaccttgccttgtatcgaatgacccaaattcactagaaagtccgcacaggttcccaaaagatggaacatgtg 11292898  T
Q  199 caaatgttaccattggctccaccaaaaataataaaaggat------ttcatttatcacctgaatttgatcctccctgagagcgggtttt 281  Q
    ||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  11292899 caaatgttaccattggctccaccaaaaataataaaaggatataaaattcatttatcacctgaatttgatcctccctgagagcgggtttt 11292987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 47 - 226
Target Start/End: Original strand, 38993313 - 38993478
Alignment:
Q  47 tacgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtctgaagattctgaggcaacaccgataactaaaccttgccttgtatcgaat 146  Q
    |||||||||||||| ||| ||||||||||| ||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||||||||||||    
T  38993313 tacgggaacctaggacgacggaaccctctctggtccaagaagaagtcaatttgaagagtctgaggcaacaccgataaccaaaccttgccttgtatcgaat 38993412  T
Q  147 gacccaaattcactagaaagtccgcacaggttcccaaaagatggaacctgtgcaaatgttaccattggctccaccaaaaa 226  Q
    |||              |||||||||||||||||||||||||||||| ||||||| || ||||||||||||| |||||||    
T  38993413 gac--------------aagtccgcacaggttcccaaaagatggaacatgtgcaagtgataccattggctccgccaaaaa 38993478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 38993534 - 38993568
Alignment:
Q  247 tcacctgaatttgatcctccctgagagcgggtttt 281  Q
    |||||||||||||||||||||||||||||||||||    
T  38993534 tcacctgaatttgatcctccctgagagcgggtttt 38993568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 27206541 - 27206829
Alignment:
Q  7 gaacataaaacagaaagaaaatagcagacataaaatta--------tttacgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtct 98  Q
    ||||||||||||||||||||| |||||||||||||  |        |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27206541 gaacataaaacagaaagaaaacagcagacataaaaagaaacatctgtttacgggaacctagggcgagggaaccctctccggtccaagaagaagttagtct 27206640  T
Q  99 gaagattctgaggcaacaccgataactaaaccttgccttgtatcgaatgacccaaattcactagaaagtccgcacaggttcccaaaagatggaacctgtg 198  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27206641 gaagattctgaggcaacaccgataactaaaccttgccttgtaacaaatgacccaaattcactagaaagtccgcacaggttcccaaaagatggaacctgtg 27206740  T
Q  199 caaatgttaccattggctccaccaaaaataataaaaggat------ttcatttatcacctgaatttgatcctccctgagagcgggtttt 281  Q
    ||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||| |||||||||||||||||||    
T  27206741 caaatgttaccattggctccaccaaaaataataaaaggatataaaattcatttatcacctgaatttgattctccctgagagcgggtttt 27206829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 20374312 - 20374403
Alignment:
Q  47 tacgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtctgaagattctgaggcaacaccgataactaaaccttgccttg 138  Q
    ||||||| |||||  ||||||||||| ||||||| |||||||||||||||||||| | | |||||||||||||||||| |||| || |||||    
T  20374312 tacgggagcctagaacgagggaacccactccggtgcaagaagaagtcagtctgaatagtttgaggcaacaccgataaccaaacgtttccttg 20374403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 20434378 - 20434468
Alignment:
Q  47 tacgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtctgaagattctgaggcaacaccgataactaaaccttgccttg 138  Q
    ||||||| |||||  | ||||||||| ||||||| |||||||||||||||||||| | |||||||| ||||||||||| |||| || |||||    
T  20434378 tacgggagcctagaacaagggaacccactccggtgcaagaagaagtcagtctgaatagtctgaggc-acaccgataaccaaacgtttccttg 20434468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 47 - 281
Target Start/End: Original strand, 3609 - 3849
Alignment:
Q  47 tacgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtctgaagattctgaggcaacaccgataactaaaccttgccttgtatcgaat 146  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  3609 tacgggaacctagggcgagggaaccctctctggtccaagaagaagtcagtctgaagattatgaggcaacaccgataactaaaacttgccttgtatcgaat 3708  T
Q  147 gacccaaattcactagaaagtccgcacaggttcccaaaagatggaacctgtgcaaatgttaccattggctccaccaaaaataataaaaggat------tt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||    
T  3709 gacccaaattcactagaaagtccgcacaggttcccaaaagatggaacctgtgcaaatgttaccattggctccaccaaaaataataaaaggatataaaatt 3808  T
Q  241 catttatcacctgaatttgatcctccctgagagcgggtttt 281  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3809 catttatcacctgaatttgatcctccctgagagcgggtttt 3849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 38500021 - 38500309
Alignment:
Q  7 gaacataaaacagaaagaaaatagcagacataaaatta--------tttacgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtct 98  Q
    ||||||||||||||||||||| |||||||||||||  |        ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  38500021 gaacataaaacagaaagaaaacagcagacataaaaagaaacatctgtttacgggaacctagggtgagggaatcctctccggtccaagaagaagtcagtct 38500120  T
Q  99 gaagattctgaggcaacaccgataactaaaccttgccttgtatcgaatgacccaaattcactagaaagtccgcacaggttcccaaaagatggaacctgtg 198  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38500121 gaagattctgaggcaacaccgataactaaaccttgccttgtaacgaatgacccaaattcactagaaagtccgcacaggttcccaaaagatggaacctgtg 38500220  T
Q  199 caaatgttaccattggctccaccaaaaataataaaaggat------ttcatttatcacctgaatttgatcctccctgagagcgggtttt 281  Q
    ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| | ||||| ||||||    
T  38500221 caaatgttaccattggctccaccaaaaataataaaaggatataaaactcatttatcacctgaatttgatcctccttaagagcaggtttt 38500309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 10706361 - 10706417
Alignment:
Q  111 gcaacaccgataactaaaccttgccttgtatcgaatgacccaaattcactagaaagt 167  Q
    |||||||||| ||| ||||||| |||||||||||||||||||||||  |||||||||    
T  10706361 gcaacaccgaaaaccaaacctttccttgtatcgaatgacccaaatttgctagaaagt 10706417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 10920131 - 10920187
Alignment:
Q  111 gcaacaccgataactaaaccttgccttgtatcgaatgacccaaattcactagaaagt 167  Q
    |||||||||| ||| ||||||| |||||||||||||||||||||||  |||||||||    
T  10920131 gcaacaccgaaaaccaaacctttccttgtatcgaatgacccaaatttgctagaaagt 10920187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 51 - 264
Target Start/End: Original strand, 43848322 - 43848542
Alignment:
Q  51 ggaacctagggcgagggaaccctctccggtccaagaagaagtcagtctgaagattctgaggcaacaccgataactaaaccttgccttgtatcgaatgacc 150  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||    
T  43848322 ggaacctagggcgagggaaccctctccagtccaagaagaagtcagtctgaagagtctgaggcaacaccgataaccaaaccttgccttgtatcaaatgacc 43848421  T
Q  151 caaattcactagaaagtccgcacaggttcccaaaagatggaacctgtgcaaatgttaccattggctccaccaaaaataataaaag-------gatttcat 243  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        | |||||    
T  43848422 caaattcgctagaaagtccgcacaggttcccaaaagatggaacctgtgcaaatgttaccattggctccgccaaaaataataaaagaaatataaaattcat 43848521  T
Q  244 ttatcacctgaatttgatcct 264  Q
    |||||||||||||||||||||    
T  43848522 ttatcacctgaatttgatcct 43848542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 48 - 281
Target Start/End: Original strand, 40263877 - 40264126
Alignment:
Q  48 acgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtctgaagattctgaggcaacaccgataactaaaccttgccttgtatcgaatg 147  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  40263877 acgggaacctagggcaagggaaccctctccggtccaagaagaagtcagtctgaagagtctgaggcaacaccgataaccaaaccttgccttgtatcgaatg 40263976  T
Q  148 acccaaattcactagaaagtccgcacaggttcccaaaagatggaacctgtgcaaatgttaccattggctccaccaaaaataataaaaggatt-------- 239  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| ||            
T  40263977 acccaaattcgctagaaagtccgcacaggttcccaaaagatggaacatgtgcaaatgttaccattgactccgccaaaaataataaaaggcttatgcgaca 40264076  T
Q  240 --------tcatttatcacctgaatttgatcctccctgagagcgggtttt 281  Q
            ||||||||||||||||||||||||| ||||||||||||||||    
T  40264077 tataaaattcatttatcacctgaatttgatcctgcctgagagcgggtttt 40264126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 45 - 227
Target Start/End: Complemental strand, 29043005 - 29042837
Alignment:
Q  45 tttacgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtctgaagattctgaggcaacaccgataactaaaccttgccttgtatcga 144  Q
    |||||||||||||||| |||||||||||||  ||||||||||| ||||  ||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  29043005 tttacgggaacctaggacgagggaaccctcgtcggtccaagaataagtatgtctgaagagtctgaggcaacaccgataaccaaaccttgccttgtatcga 29042906  T
Q  145 atgacccaaattcactagaaagtccgcacaggttcccaaaagatggaacctgtgcaaatgttaccattggctccaccaaaaat 227  Q
    |||||              |||||||||||||||||| ||||||||||| ||||||| || ||||||||||||| ||||||||    
T  29042905 atgac--------------aagtccgcacaggttccctaaagatggaacatgtgcaagtgataccattggctccgccaaaaat 29042837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 43855986 - 43855895
Alignment:
Q  47 tacgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtctgaagattctgaggcaacaccgataactaaaccttgccttg 138  Q
    ||||||| |||||  ||| ||||||| ||| |||||||||||||||||||||||| | |||||||||| ||||||||| |||| ||||||||    
T  43855986 tacgggagcctagaacgaaggaacccactctggtccaagaagaagtcagtctgaatagtctgaggcaaaaccgataaccaaacgttgccttg 43855895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 29043054 - 29043020
Alignment:
Q  7 gaacataaaacagaaagaaaatagcagacataaaa 41  Q
    ||||||||||||||||||||| |||||||||||||    
T  29043054 gaacataaaacagaaagaaaacagcagacataaaa 29043020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 47 - 236
Target Start/End: Complemental strand, 8983666 - 8983477
Alignment:
Q  47 tacgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtctgaagattctgaggcaacaccgataactaaaccttgccttgtatcgaat 146  Q
    |||||||||||  |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |    
T  8983666 tacgggaaccttaggcgagagaaccctctccggtccaagaagaagtcagtctgaagagtctgaggcaacaccgataaccaaaccttgccttgtatcgagt 8983567  T
Q  147 gacccaaattcactagaaagtccgcacaggttcccaaaagatggaacctgtgcaaatgttaccattggctccaccaaaaataataaaagg 236  Q
    ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  8983566 gactcaaattcgctagaaagtccgcacaggttcccaaaagatggaaccggtgcaaatgttaccattggctccgccaaaaataataaaagg 8983477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 174
Target Start/End: Complemental strand, 17122697 - 17122570
Alignment:
Q  47 tacgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtctgaagattctgaggcaacaccgataactaaaccttgccttgtatcgaat 146  Q
    ||||||||||||| |||||||||||| || |||||||||||||| |||||||||||| | |||||||||||||| ||| |||||  ||||||| |||| |    
T  17122697 tacgggaacctagagcgagggaacccacttcggtccaagaagaaatcagtctgaagagtttgaggcaacaccgagaaccaaaccgagccttgtgtcgagt 17122598  T
Q  147 gacccaaattcactagaaagtccgcaca 174  Q
    |||||| |||  |||| ||||| |||||    
T  17122597 gacccatattagctagcaagtctgcaca 17122570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 152
Target Start/End: Complemental strand, 27534109 - 27534004
Alignment:
Q  47 tacgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtctgaagattctgaggcaacaccgataactaaaccttgccttgtatcgaat 146  Q
    ||||||||||||| |||||||||||| |||||||| |||||||| |||||||||||| | |||||||||||||| ||| |||||  ||||||| |||| |    
T  27534109 tacgggaacctagagcgagggaacccactccggtctaagaagaaatcagtctgaagagtttgaggcaacaccgagaaccaaaccgagccttgtgtcgagt 27534010  T
Q  147 gaccca 152  Q
    ||||||    
T  27534009 gaccca 27534004  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 21488044 - 21488135
Alignment:
Q  47 tacgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtctgaagattctgaggcaacaccgataactaaaccttgccttg 138  Q
    ||||||| |||||  ||||||||||| |||||||||||||||||||||||||| | | || ||||||||||||||| | |||| ||||||||    
T  21488044 tacgggagcctagaacgagggaacccactccggtccaagaagaagtcagtctgtatagtcggaggcaacaccgatagccaaacgttgccttg 21488135  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 33065047 - 33065116
Alignment:
Q  51 ggaacctagggcgagggaaccctctccggtccaagaagaagtcagtctgaagattctgaggcaacaccga 120  Q
    |||||| || |||||||||||| ||||||||||| ||||||||||| |||||| ||||||||||||||||    
T  33065047 ggaaccgagagcgagggaacccactccggtccaaaaagaagtcagtatgaagagtctgaggcaacaccga 33065116  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 152
Target Start/End: Original strand, 15318289 - 15318396
Alignment:
Q  47 tacgggaacctaggg--cgagggaaccctctccggtccaagaagaagtcagtctgaagattctgaggcaacaccgataactaaaccttgccttgtatcga 144  Q
    ||||||||||||| |  ||||||||||| ||||| ||||||||||  ||| |||||||| ||||||||||||| || ||| |||||  | ||||| ||||    
T  15318289 tacgggaacctagagagcgagggaacccactccgatccaagaagagatcaatctgaagagtctgaggcaacactgagaaccaaaccgagtcttgtgtcga 15318388  T
Q  145 atgaccca 152  Q
     |||||||    
T  15318389 gtgaccca 15318396  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 21492144 - 21492187
Alignment:
Q  239 ttcatttatcacctgaatttgatcctccctgagagcgggttttg 282  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  21492144 ttcatttatcacctgagttggatcctccctgagagcgggttttg 21492187  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 8983458 - 8983416
Alignment:
Q  239 ttcatttatcacctgaatttgatcctccctgagagcgggtttt 281  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  8983458 ttcatttatcacctgaatttgatcctgcatgagagcgggtttt 8983416  T

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Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 20952298 - 20952085
Alignment:
Q  7 gaacataaaacagaaagaaaatagcagacataaaatta--------tttacgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtct 98  Q
    ||||||||||||||||||||| |||||||||||||  |        | |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20952298 gaacataaaacagaaagaaaacagcagacataaaaagaaacatctgtctacgggaacctaggacgagggaaccctctccggtccaagaagaagtcagtct 20952199  T
Q  99 gaagattctgaggcaacaccgataactaaaccttgccttgtatcgaatgacccaaattcactagaaagtccgcacaggttcccaaaagatggaacctgtg 198  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||||||||||              ||||||||||| |||||| ||||||||||||||||    
T  20952198 gaagagtctgaggcaagaccgataaccaaaccttgccttgtatcgaatgac--------------aagtccgcacaagttccctaaagatggaacctgtg 20952113  T
Q  199 caaatgttaccattggctccaccaaaaa 226  Q
    ||| || ||||||||||||| |||||||    
T  20952112 caagtgataccattggctccgccaaaaa 20952085  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 10303625 - 10303716
Alignment:
Q  61 gcgagggaaccctctccggtccaagaagaagtcagtctgaagattctgaggcaacaccgataactaaaccttgccttgtatcgaatgaccca 152  Q
    |||||||||||| ||||||||||| |||||||||||||||||| |||||||||| ||||| ||| ||    |||||||||||||||||||||    
T  10303625 gcgagggaacccactccggtccaaaaagaagtcagtctgaagagtctgaggcaataccgagaaccaagttgtgccttgtatcgaatgaccca 10303716  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 10287908 - 10287999
Alignment:
Q  61 gcgagggaaccctctccggtccaagaagaagtcagtctgaagattctgaggcaacaccgataactaaaccttgccttgtatcgaatgaccca 152  Q
    |||||||||||  |||| |||||| |||||||||||||||||| |||||||||||||||| ||| ||    |||||||||||||||||||||    
T  10287908 gcgagggaaccgactccagtccaaaaagaagtcagtctgaagagtctgaggcaacaccgaaaaccaagttgtgccttgtatcgaatgaccca 10287999  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 20952029 - 20951995
Alignment:
Q  247 tcacctgaatttgatcctccctgagagcgggtttt 281  Q
    |||||||||||||||||||| ||||||||||||||    
T  20952029 tcacctgaatttgatcctccttgagagcgggtttt 20951995  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 21027241 - 21027332
Alignment:
Q  47 tacgggaacctagggcgagggaaccctctccggtccaagaagaagtcagtctgaagattctgaggcaacaccgataactaaaccttgccttg 138  Q
    ||||||| |||||  ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||| |||| ||||||||    
T  21027241 tacgggagcctagaacgagggaacccactccggtccaagaagaagtcagtctgaatagtctgaggcaacaccgataaccaaacgttgccttg 21027332  T

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Target: scaffold0111 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 41462 - 41533
Alignment:
Q  67 gaaccctctccggtccaagaagaagtcagtctgaagattctgaggcaacaccgataactaaaccttgccttg 138  Q
    |||||| |||| |||||||||||||||| |||||| | | |||||||||||||||||| |||| ||||||||    
T  41462 gaacccactccagtccaagaagaagtcaatctgaatagtttgaggcaacaccgataaccaaacgttgccttg 41533  T

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Target: scaffold0111; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 45573 - 45616
Alignment:
Q  239 ttcatttatcacctgaatttgatcctccctgagagcgggttttg 282  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||    
T  45573 ttcatttatcacctggattggatcctccttgagagcgggttttg 45616  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 160214 - 160181
Alignment:
Q  8 aacataaaacagaaagaaaatagcagacataaaa 41  Q
    |||||||||||||||||||| |||||||||||||    
T  160214 aacataaaacagaaagaaaacagcagacataaaa 160181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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