View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_9 (Length: 587)
Name: NF1643_low_9
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 15 - 579
Target Start/End: Complemental strand, 25105761 - 25105191
Alignment:
| Q |
15 |
attatatacatctcaccaacagttggttcatgaaattaacttttccagcatttgaagacagagcgagctcaaatgtaatttatgaatttttaagatgcat |
114 |
Q |
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| T |
25105761 |
attatatacatctcaccaacagttggttcatgaaattaacttttccagcatttgaagacagagcgagctcaaatgtaatttatgaatttttaagatgcat |
25105662 |
T |
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| Q |
115 |
tcaggaactattagataattaaataccctttagccatatcaattagcaagagcttcaactcactgaaatcgtgatatcatatatatcagtattgaagtcc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25105661 |
tcaggaactattagataattaaataccctttagccatatcaattagcaagagcttcaactcactgaaatcgtgatatcttatatatcagtattgaagtcc |
25105562 |
T |
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| Q |
215 |
ggatgtctttttatgcaagctcagtcaaccaagttctta-----tttctttgataatctatcatacattctaaaataaatctgcctaatattcttgaaat |
309 |
Q |
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| T |
25105561 |
gaatgtctttttatgcaagctcagttacccaagttcttatctattttctttgataatctatcatacattctaaaataaatctgcttcatattcttgaaat |
25105462 |
T |
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| Q |
310 |
caattgtatgctcatttatattcataactgatcaacttcaaatcagaaaacaagtgaacaggcagagcctccattcttggcacattaggagatgcaaata |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25105461 |
caattgtatgctcatttatattcataactgatcaacttcaaatcagaaaacaagtgaacaggcagagcctccattcttggcacattaggagatgcaaata |
25105362 |
T |
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| Q |
410 |
tctgatcttgcagcgtacaagattttataatccgatcgcaagatttatg-tacacttttttgcatgataactgacacgctgcctaaattagtatcccaaa |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25105361 |
tctgatcttgcagcgtacaagattttataatccgatcgcaagatttatgttacacttttttgcatgaaaactgacacgctgcctaaattagtatcccaac |
25105262 |
T |
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| Q |
509 |
aatattttaggctttaacaaatggtaatggtactgaattatagccaagtgaaactttgaaggagaataatc |
579 |
Q |
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| T |
25105261 |
aatattttaggctttaacaaacggtaatggtactgaattatagccaagtgaaactttgaaggagaataatc |
25105191 |
T |
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