View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_93 (Length: 282)
Name: NF1643_low_93
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_93 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 30906312 - 30906566
Alignment:
| Q |
18 |
cctttcacatacattatttgaaataaagtcgtgcctctcaaattgtctctttttacgtggagatagttgaataaaagacttccaactaagggtaacttgg |
117 |
Q |
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| T |
30906312 |
cctttcacatacattatttggaataaaatcgtgcctctcaaagtgtctctttttacgtggagatagttgaataaaagacttccaactaagggtaacttgg |
30906411 |
T |
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| Q |
118 |
ctcgatgtagagttatacacctaaggtcgctattatgctcaggtggttgtggggaggaggaatcttttaatcatctattcttggattgcactttctttga |
217 |
Q |
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| T |
30906412 |
ctcgacgtggagttatacatctaaggtcgctattatgcccaggtggttgtggggaggaggaatctgttaatcatctattcttggattgcactttctttaa |
30906511 |
T |
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| Q |
218 |
aatgcctggctttatatttaataatggtcggggatatatatcgggcttccctatg |
272 |
Q |
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| T |
30906512 |
aatgcctggctttatatttaataatggtcggggatatatatcgggcttccttatg |
30906566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 51840217 - 51840130
Alignment:
| Q |
19 |
ctttcacatacattatttgaaataaagtcgtgcctctcaaattgtctctttttacgtggagatagttgaataaaagacttccaactaa |
106 |
Q |
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| T |
51840217 |
ctttcacgaacatcatttgaaataaagtggtgtatctcaaagtgtctctatttacgtagaggcaactgaataaaagacttccaactaa |
51840130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 35201881 - 35201985
Alignment:
| Q |
18 |
cctttcacatacattatttgaaataaagtcgtgcctctcaaattgt-ctctttttacgtggagatagttgaataaaagacttccaactaagggtaacttg |
116 |
Q |
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|||||||| |||| ||||| |||||||| ||||||||||| || | |||||||| |||||||| ||||||||||||| |||| || |||| | ||||| |
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| T |
35201881 |
cctttcacgaacatcatttggaataaagtggtgcctctcaagtttttctctttttgtgtggagattgttgaataaaagaattcccacaaaggattacttg |
35201980 |
T |
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| Q |
117 |
gctcg |
121 |
Q |
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||||| |
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| T |
35201981 |
gctcg |
35201985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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