View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_low_94 (Length: 282)
Name: NF1643_low_94
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_low_94 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 4670092 - 4669820
Alignment:
| Q |
1 |
taaattagagcttccaaaccaaaatcatccatatctatgcaaattacaatgacttaacaaagttagtgaagtgaaa---------tgttctctagtgagc |
91 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
4670092 |
taaattagagcttccaaaccaaaatcatccatatctatgcaaattacaatgacttaacaaagttagtgaagtgaaagtcactaaatgttgtctagtgagc |
4669993 |
T |
|
| Q |
92 |
ttttcgactggtccaaaatatcaagatgcatatg-atgccattcctatctatgcatgacaccttgtactttgaagacttagacaatataattgttgtgcc |
190 |
Q |
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||||||||| ||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4669992 |
ttttcgactagtccaaaatatcaagatacatatggatgccattcctatcgatgcatgacaccttgtactttgaagacttagacaatataattgttgtgcc |
4669893 |
T |
|
| Q |
191 |
ttgtatgacggttatgccaatgcatactcatttgttaaagatgtagtaaaagtcaacctaattatgttatcag |
263 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4669892 |
ttgtatgacggttatgccaatgcatactcatttgttaaagatgtagtaaaagtcaacctaattatgttatcag |
4669820 |
T |
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