View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1644-INSERTION-1 (Length: 476)
Name: NF1644-INSERTION-1
Description: NF1644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1644-INSERTION-1 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 9 - 475
Target Start/End: Original strand, 39449497 - 39449964
Alignment:
| Q |
9 |
agtgggatgtgtgtgtcaatgtcatgtgcattagtcaagatgtgtggaaatggaaaaatgattgaaagagaat--gttaccaacgtgttttaactcacgt |
106 |
Q |
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| T |
39449497 |
agtgggatgtgtgtgtcaatgtcatgtgcattagtcaagatgtgtggaaatggaaaaatgattgaaagagaatatgttaccaacgtgttttaactcacgt |
39449596 |
T |
|
| Q |
107 |
tggtgttcagatttaattcacgttggagttatttttggtagtttgagatggtaatgggcaaaagtagttgggagaagagcaattttcaaaaagtgtgccg |
206 |
Q |
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| T |
39449597 |
tggtgttcaaatttaattcacgttggagttatttttggtagtttgagatggtaatgagcaaaagtagttgggagaagagcaattttcaaaaagtgtgacg |
39449696 |
T |
|
| Q |
207 |
gacttggcccaagcccaatttaaattggactcacacagggaacacacacgaaggccctgctcaacatacatccctagctggcaaacaccaggtgattaat |
306 |
Q |
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| T |
39449697 |
gacttggcccaagcccaatttaaattggactcacacagggaacgcacacgaaggccctgctcaacatacatccctagctggcaaacaccaggtgattaat |
39449796 |
T |
|
| Q |
307 |
agtatcacacaatgatcggtagacaacaccgagactcgcgtcgtaattccctcattggtctcaatgggatcaccataaggtacacacannnnnnncctca |
406 |
Q |
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| T |
39449797 |
agtatcacacaatgatcggtagacaacaccgagactcgcgtcgtaattccctcattggtctcaatgggatcaccataaggtacacaca-ttttttcctca |
39449895 |
T |
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| Q |
407 |
taaacatctcactctacttaattatcatatactaatttgagcatcagaatgtatgcgtgtacatcaccc |
475 |
Q |
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| T |
39449896 |
taaacatctcactctatttaattatcatatactaatctgagcattcgaatgtatgcgtgtacatcaccc |
39449964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 39449388 - 39449290
Alignment:
| Q |
18 |
tgtgtgtcaatgtcatgtgcattagtcaagatgtgtggaaatggaaaaatgattgaaagaga--atgttaccaacgtgttttaactcacgttggtgttc |
114 |
Q |
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| T |
39449388 |
tgtgtgtcaatgtcatgtgcattagccaagatgtatgggaatggaaaagtgattgaaagagaatatgttaccaacgtgagttaactcatgctggtgttc |
39449290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 53633786 - 53633748
Alignment:
| Q |
40 |
tagtcaagatgtgtggaaatggaaaaatgattgaaagag |
78 |
Q |
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| T |
53633786 |
tagtcaagatgtgtggcaatggaaaaatgactgaaagag |
53633748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 25155462 - 25155394
Alignment:
| Q |
119 |
ttaattcacgttggagttatttttggtagtttgagatggtaatgggcaaaagtagttgggagaagagca |
187 |
Q |
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| T |
25155462 |
ttaattcacattggggttattttaggcagtttgaggtgggaatgagcaaaactgtttgggagaagagca |
25155394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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