View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1644-INSERTION-2 (Length: 663)
Name: NF1644-INSERTION-2
Description: NF1644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1644-INSERTION-2 |
 | |
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| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 523; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 8 - 663
Target Start/End: Complemental strand, 32602002 - 32601348
Alignment:
| Q |
8 |
gattgttgggcggaacttaatcgagactcacaggtatttaatatatatcttaaaaaatccattgatttgtatgtttattttcttcatgtatttttatgtg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
32602002 |
gattgttgggcggaacttaatcgagactcacaggtatttaatatatatcttaaaaaatccattgatttgtatgtttattttcttcatgtacttttatgtg |
32601903 |
T |
|
| Q |
108 |
tattttnnnnnnnntagaggttaagtgaatttaaattaatagattaatatatat--tatactgtttatatctctgacaagtttaatatgttagggaaata |
205 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
32601902 |
tattttaaaaaaa-tacaggttaagtgaatttaaattaatagattaatatatatattatagtgtttatatctctgacaagttaaatatgttagggaaata |
32601804 |
T |
|
| Q |
206 |
tggttcccaaggcttcaacgtttccttcaggaatcaaggctctagctcattatattcacaggaaaggcatgaagttgggaatttattcagatgccgggta |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32601803 |
tggttcccaaggcttcaacgtttccttcaggaatcaaggctctagctcattatattcacaggaaaggcatgaagttgggaatttattcagatgccgggta |
32601704 |
T |
|
| Q |
306 |
tcgacatattaaattttatttgatgatcataaatatgattgttcaagcattatttatgatcacttacaattgctatgcagaaatcaaacttgtagtaaac |
405 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32601703 |
tcgacatattaaattttatttcatgatcatgaatatgattgttcaagcattatttatgatcacttacaattgctatgcagaaatcaaacttgtagtaaac |
32601604 |
T |
|
| Q |
406 |
gtatgcctggatcattgggacatgaaatacaagatgccaaaacatttgcttcttgggtaaaccatatatacatacattatttgaaaatcatttttcactt |
505 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
32601603 |
gtatgcctggatcactaggacatgaaatacaagatgccaaaacatttgcttcttgggtaaaccatatatacatacattatttgaaaatcatttttcaatt |
32601504 |
T |
|
| Q |
506 |
ttatcaacattattatatcctatttataatcttatgttgttaactaatattggttcaaatttttctttaaggaagtcgactatttgaagtatgataattg |
605 |
Q |
| |
|
||||||||| |||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
32601503 |
ttatcaaca---ttatattctatttctaaccttatgttgttaaccaatattggttcaaatttttcttt-agggagtcgactatttgaagtatgataattg |
32601408 |
T |
|
| Q |
606 |
tgaaaataatggtataagtgttagagaa--gtatttaatttattttcttcaaatgaaaat |
663 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||| |
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|
| T |
32601407 |
tgaaaataatggtataagcgttagagaaaggtatttaatttattttcttcaaattaaaat |
32601348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 663
Target Start/End: Complemental strand, 32591542 - 32590879
Alignment:
| Q |
8 |
gattgttgggcggaacttaatcgagactcacaggtatttaatatatatc----ttaaaaaa---tccattgatttgtatgtttattttcttcatgtattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||| || || |
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|
| T |
32591542 |
gattgttgggcggaacttaatcgagactcgcaggtatttaatatatatcgcctttaaaaaaaattccattaatttgtatgtttattttcttcatatactt |
32591443 |
T |
|
| Q |
101 |
ttatgtgt--attttnnnnnnnn----tagag--gttaagtgaatttaaattaatagattaatatatattatactgtttatatctctgacaagtttaata |
192 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||||||||||| |||||||| | || |||||||| | |||||||||| || | |
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|
| T |
32591442 |
ttatgtgtctattttggaaaaaagatatagataagttaagtgaatttaaattaatatattaatatttcgtag--tgtttatacccctgacaagttaaaga |
32591345 |
T |
|
| Q |
193 |
tgttagggaaatatggttcccaaggcttcaacgtttccttcaggaatcaaggctctagctcattatattcacaggaaaggcatgaagttgggaatttatt |
292 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||| |||| |
|
|
| T |
32591344 |
tgttagggaaatatgattcccaaggcttccacgtttccttcaggaatcaaggctctagctcattatattcataagaaaggcttgaagttgggaatctatt |
32591245 |
T |
|
| Q |
293 |
cagatgccgggtatcgacatattaaattttatttgatgatcataaatatgattgttcaagcattatttatgatcacttacaattgctatgcagaaatcaa |
392 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||| | || | | ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32591244 |
cagatgccgggtatcaacatattaaatttt--ttg-taatagtgactatgattgttcaaacattatttatgatcacttacaattgctatgcagaaatcaa |
32591148 |
T |
|
| Q |
393 |
acttgtagtaaacgtatgcctggatcattgggacatgaaatacaagatgccaaaacatttgcttcttgggtaaaccatatatacatacattatttgaaaa |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| |
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|
| T |
32591147 |
acttgtagtaaacgtatgcctggatcattgggacatgaaatacaagatgccaaaacatttgcttcttgggtatatcacatatacatacattatttgaaag |
32591048 |
T |
|
| Q |
493 |
tcatttttcacttttatcaacattattatatcctatttataatcttatgttgttaactaatattggttcaaatttttctttaaggaagtcgactatttga |
592 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | |||||||||||||||||||||| |||| || || ||| |||||||| ||| |||||||||||||| |
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|
| T |
32591047 |
tcatttttcacttttatcaaca---ttatatcttgtttataatcttatgttgttaaccaatactgatttaaaattttcttt-agggagtcgactatttga |
32590952 |
T |
|
| Q |
593 |
agtatgataattgtgaaaataatggtataagtgttagagaa--gtatttaatttattttcttcaaatgaaaat |
663 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||||||| ||||||||||||| ||||||||||| |||| |
|
|
| T |
32590951 |
agtatgataattgtcacaataatggtataagcgttagagaaaggtatttaatttatgttcttcaaatgcaaat |
32590879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 371 - 465
Target Start/End: Original strand, 24882965 - 24883059
Alignment:
| Q |
371 |
acaattgctatgcagaaatcaaacttgtagtaaacgtatgcctggatcattgggacatgaaatacaagatgccaaaacatttgcttcttgggtaa |
465 |
Q |
| |
|
|||||| || |||||||||||||| || |||||| | ||||| |||||||| || |||||| ||||||||| |||||||||||||| ||||||| |
|
|
| T |
24882965 |
acaatttctctgcagaaatcaaacatgcagtaaaagaatgccaggatcattagggcatgaagaacaagatgcaaaaacatttgcttcatgggtaa |
24883059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 195 - 623
Target Start/End: Complemental strand, 34579159 - 34578736
Alignment:
| Q |
195 |
ttagggaaatatggttcccaaggcttcaacgtttccttcaggaatcaaggctctagctcattatattcacaggaaaggcatgaagttgggaatttattca |
294 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
34579159 |
ttaggggaatatggttcccaaggcttcaacgtttccttcaggaatcaaggctctagctcattatattcataggaaaggcttgaagttgggagtttattca |
34579060 |
T |
|
| Q |
295 |
gatgccgggtatcgacatattaaattttatttgatgatcataaatatgattgttcaagcattatttatgatcacttacaattgctatgcagaaatcaaac |
394 |
Q |
| |
|
|||||||||||| || |||||||| || ||| ||| ||| | ||| |||||||||||| ||||| ||||||||||||||| |||||||||||| ||| |
|
|
| T |
34579059 |
gatgccgggtattaacgcattaaattgtacttggtgaacatgactataattgttcaagcaatatttttgatcacttacaatttttatgcagaaatctaac |
34578960 |
T |
|
| Q |
395 |
ttgtagtaaacgtatgcctggatcattgggacatgaaatacaagatgccaaaacatttgcttcttgggtaaaccatatatacatacattatttgaaaatc |
494 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | |||| ||||||||| | ||| | |
|
|
| T |
34578959 |
ttgtagtaaacgtatgcctggatcactgggacatgaaatacaagatgccaaaacatttgcttcttgggtatataaaatatgcatacattactcaaaagta |
34578860 |
T |
|
| Q |
495 |
atttttcacttttatcaacattattatatcctatttataatcttatgttgttaactaatattggttcaaatttttctttaaggaagtcgactatttgaag |
594 |
Q |
| |
|
| ||| | | ||||||| |||||| | ||| ||| ||| || ||||||||| | ||||| || |||||||| ||| ||| ||| |||||||||||| |
|
|
| T |
34578859 |
aatttgtatatctatcaac---attataccatatatat-atcctaggttgttaaccagtattgatttaaatttttgttt-agggagttgactatttgaag |
34578765 |
T |
|
| Q |
595 |
tatgataattgtgaaaataatggtataag |
623 |
Q |
| |
|
|||||||||||||||||||| || ||||| |
|
|
| T |
34578764 |
tatgataattgtgaaaataacggaataag |
34578736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 218 - 633
Target Start/End: Complemental strand, 35124823 - 35124416
Alignment:
| Q |
218 |
cttcaacgtttccttcaggaatcaaggctctagctcattatattcacaggaaaggcatgaagttgggaatttattcagatgccgggtatcgacatattaa |
317 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| |||||| ||||||| |||||||||| |||||||||||||| ||||||| ||||||||| |
|
|
| T |
35124823 |
cttcaacgtttccttcgggaatcaaggctctggctcattatgttcacatgaaaggcttgaagttggggatttattcagatgctgggtatcaacatattaa |
35124724 |
T |
|
| Q |
318 |
attttatttgatgatcataaatatgattgttcaagcattatttatgatcacttacaattgctatgcagaaatcaaacttgtagtaaacgtatgcctggat |
417 |
Q |
| |
|
||| |||||||||||||||| || ||| || || |||||||||| || | ||||||| |||| ||||||| ||||||||||||||| |||||||||| |
|
|
| T |
35124723 |
attatatttgatgatcataacaattattttttaaccattatttataat-atctacaatttttatgtagaaatctaacttgtagtaaacgcatgcctggat |
35124625 |
T |
|
| Q |
418 |
cattgggacatgaaatacaagatgccaaaacatttgcttcttgggtaaaccatatatacatacattatttgaaaatcatttttcacttttatcaacatta |
517 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| |||||| || |||||| || || ||| |||| |
|
|
| T |
35124624 |
cactaggacatgaaatacaagatgccaaaacatttgcttcttgggtatatcatatatacattcatta-ttgaaagccaattttcatttctaccaaaatta |
35124526 |
T |
|
| Q |
518 |
ttatatcctatttataatcttatgttgttaactaatattggttcaaatttttctttaaggaagtcgactatttgaagtatgataattgtgaaaataatgg |
617 |
Q |
| |
|
| ||| | ||||| || ||||||||| || | | || ||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35124525 |
tattatgc-----ataattataagttgttaaccaacactaatttaaaattttcttt-agggagtcgactatttgaagtatgataattgtgaaaataatgg |
35124432 |
T |
|
| Q |
618 |
tataagtgttagagaa |
633 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
35124431 |
tataagcgttagagaa |
35124416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 362 - 491
Target Start/End: Complemental strand, 34594733 - 34594602
Alignment:
| Q |
362 |
tgatcacttacaattgctatgcagaaatcaaacttgtagtaaacgtatgcctggatcattgggacatgaaatacaagatgccaaaacatttgcttcttgg |
461 |
Q |
| |
|
||||||||| ||||| ||||||||| || |||||||||||||| |||||||||||| ||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
34594733 |
tgatcacttgcaatttttatgcagaactcttacttgtagtaaacgcatgcctggatcactgggacatgaagaacaagatgctaaaacatttgcttcttgg |
34594634 |
T |
|
| Q |
462 |
gta-aaccatatataca-tacattatttgaaa |
491 |
Q |
| |
|
||| | ||||||||| |||||||||||||| |
|
|
| T |
34594633 |
gtattataatatatacattacattatttgaaa |
34594602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 34594906 - 34594796
Alignment:
| Q |
196 |
tagggaaatatggttcccaaggcttcaacgtttccttcaggaatcaaggctctagctcattatattcacaggaaaggcatgaagttgggaatttattcag |
295 |
Q |
| |
|
|||||||||||||||||||| || |||| ||||| |||||||| |||||| ||||| ||||| |||||| ||||| | |||||||| ||||| |||| |
|
|
| T |
34594906 |
tagggaaatatggttcccaatactgcaacatttccctcaggaatgaaggctttagctgattatgttcacaacaaaggtttaaagttggggatttactcag |
34594807 |
T |
|
| Q |
296 |
atgccgggtat |
306 |
Q |
| |
|
|||| |||||| |
|
|
| T |
34594806 |
atgctgggtat |
34594796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 562 - 623
Target Start/End: Complemental strand, 34594504 - 34594444
Alignment:
| Q |
562 |
aaatttttctttaaggaagtcgactatttgaagtatgataattgtgaaaataatggtataag |
623 |
Q |
| |
|
||||||||||||| |||| | ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34594504 |
aaatttttctttagggaatt-gactatttgaagtatgataattgtgaaaacaatggtataag |
34594444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 34579376 - 34579333
Alignment:
| Q |
8 |
gattgttgggcggaacttaatcgagactcacaggtatttaatat |
51 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
34579376 |
gattgttgggcggaacttaatcgagactcaaaggtatttgatat |
34579333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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