View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16440_high_3 (Length: 348)
Name: NF16440_high_3
Description: NF16440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16440_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 28 - 332
Target Start/End: Complemental strand, 53042415 - 53042109
Alignment:
| Q |
28 |
ttaatactgattaaatacattgttgcataatctattatgagggagtaccataaactcagaaaaattataaattactggattaacaacattatccacaaaa |
127 |
Q |
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| T |
53042415 |
ttaatactgattaaatacattgttgcataatctattatgagggagtaccataaactcagaaaaattataaattactggattaacaacattatccacaaaa |
53042316 |
T |
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| Q |
128 |
accaaagaacaacaaatagtgtgaatctagcctaaataagtgatagaggtttgagatttgaaccaaagatttgataaattatattcctcaacaagagaaa |
227 |
Q |
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| T |
53042315 |
accaaagaacaacaaatagtgtgaatctagcctaaataagtgatagaggtttgagatttgaaccaaagatttaataaattatattcctcaacaagagaaa |
53042216 |
T |
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| Q |
228 |
aataaaacttgtcaaaagaagccatcaatgtcttcatg--tatgtatatttaagacaaaatgttatatgttgtaaatgaagaaaatcattgttgcaacca |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53042215 |
aataaaacttgtcaaaagaagccatcaatgtcttcatgtatatttaaatttaagacaaaatgttatatgttgtaaatgaagaaaatcattgttgcaacca |
53042116 |
T |
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| Q |
326 |
tcatttt |
332 |
Q |
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||||||| |
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| T |
53042115 |
tcatttt |
53042109 |
T |
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