View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16440_high_4 (Length: 307)

Name: NF16440_high_4
Description: NF16440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16440_high_4
NF16440_high_4
[»] chr3 (1 HSPs)
chr3 (2-297)||(46441770-46442065)


Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 2 - 297
Target Start/End: Original strand, 46441770 - 46442065
Alignment:
Q  2 agcataggcgagctttggggagttttgcttgggcttcagatggtgcttgatcgaggattcacggcggtggagactggagttgtgtattgattcccaagca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46441770 agcataggcgagctttggggagttttgcttgggcttcagatggtgattgatcgaggattcaaggcggtggagactggagttgtgtattgattcccaagca 46441869  T
Q  102 gttatcatgattcatgagtattaagaaagggtgtgttagtgccaatggttggagacaagtgcagaaaattcggcaactaatggagcgtgagcgggaaata 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46441870 gttatcatgattcatgagtattaagaaagggtgtgttagtgccaatggttggagaccagtgcagaaaattcggcaactaatggagcgtgagcgggaaata 46441969  T
Q  202 acgataagtcattcttatcgggaagcgaacatgtgtgcagatggacttgctaatattggatgtcgtagtagcacaaatttaatagtttatgatgat 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46441970 acgataagtcattcttatcgggaagcgaacatgtgtgcagatggacttgctaatattggatgtcgtagtagcacaaatttaatagtttatgatgat 46442065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University