View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16440_low_2 (Length: 392)
Name: NF16440_low_2
Description: NF16440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16440_low_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 38524078 - 38523704
Alignment:
| Q |
18 |
acaaattgttctcatggccattgcattgaaatcacattgcttcttgcaattgaagaaacctgaaaccggttttcgggtcggtgtttcctccaagaatgct |
117 |
Q |
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| T |
38524078 |
acaaattgttctcatggccattgcattgaaatcacattgcttgttgcaattgaagaaacctgaaaccggttttcgggtcggtgtttcctccaagaatgct |
38523979 |
T |
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| Q |
118 |
acaataatctcaattaaaagatacacttcggtgtctgctagtgctaccaggagtattgaagcgattagcatctcagaaacattcaacaatctgaagaaac |
217 |
Q |
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| T |
38523978 |
acaataatctcaattaaaagatacacttcggtgtctgctagtgctaccaggagtattgaagcgattagcatctcagaaacattcaacaatctgaagaaac |
38523879 |
T |
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| Q |
218 |
aaggaaaagtgagtgtacnnnnnnnnnnnnnnnnnnnnnnnnggttccatgcaatgtatgtcacgttttctcttcaacttgaatacttgtaccacatatt |
317 |
Q |
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| T |
38523878 |
aaggaaaagtgagtgtacttatttattatatttttattttttggttccatgcaatgcatgtcacgttttctcttcaacttgaatagttgtaccacatatt |
38523779 |
T |
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| Q |
318 |
gttttaattattccattttctatgcttttacaaatcaataacttttctttgcctggttataatatggattagtat |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38523778 |
gttttaattattccattttctatgcttttacaaatcaataacttttctttgcctggttataatatggattagtat |
38523704 |
T |
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