View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16441_high_5 (Length: 352)
Name: NF16441_high_5
Description: NF16441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16441_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 208 - 335
Target Start/End: Complemental strand, 5473242 - 5473115
Alignment:
| Q |
208 |
cctgtttcattatacctcggtcaacttgccacgtacaccagaattttccataagttttggcaagactttcaagctcaggcatgccaatcatctctggaac |
307 |
Q |
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| T |
5473242 |
cctgttccattatacctcggtcaacctgccacgtacaccagaattttccataagttttggcaagactttcaagctcaggcatcccaatcatctctggaac |
5473143 |
T |
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| Q |
308 |
tctaggattcacccacagacctgatttt |
335 |
Q |
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| T |
5473142 |
tctaggattcacccacagacctgatttt |
5473115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 5473790 - 5473711
Alignment:
| Q |
13 |
gacatcatcagggctggtgcacccaatggaagcctgtcccctgcatttacaattttcatataaattttccaacattaaaa |
92 |
Q |
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| T |
5473790 |
gacatcataagggctggtgctcccagtggaagcctgtcccctgcatttccatttttcatataaattttccaacattaaaa |
5473711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 5479870 - 5479825
Alignment:
| Q |
13 |
gacatcatcagggctggtgcacccaatggaagcctgtcccctgcat |
58 |
Q |
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| T |
5479870 |
gacatcatcagggctggtgcacccagtggaagcctgtctcctgcat |
5479825 |
T |
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