View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16441_high_8 (Length: 293)
Name: NF16441_high_8
Description: NF16441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16441_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 133 - 277
Target Start/End: Original strand, 38479318 - 38479462
Alignment:
| Q |
133 |
tgtagctcccgggacctgcatagtgcacatcatacaaagagaagcaatcaacccgcataaagccaacattccaaatattttggccagttattaataaata |
232 |
Q |
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| T |
38479318 |
tgtagctcccgggacctgcatagtgcacatcatacaaagagaagcaatcagcccgcataaagccaacattccaaatattttggccagttattaataaata |
38479417 |
T |
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| Q |
233 |
atcggcctattaaaatagatacagaatggttactgattcaccatc |
277 |
Q |
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| T |
38479418 |
atcggcctattaaaatagatacagaatggttactgattcaccatc |
38479462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 38479152 - 38479272
Alignment:
| Q |
15 |
tatctctttaatcagtaaccataaatggatccacatccccaagatcagcaaccaaaggtttcatatcatctgtatcttcatcttctggcacaaagtaagt |
114 |
Q |
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| T |
38479152 |
tatctctttaatcagtaaccataaatggatccacatccccaagatcagcaaccaaaggtttcatatcatctgtatcttcatcttctggcacaaagtaagt |
38479251 |
T |
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| Q |
115 |
tgggaaaggaagtatagatgt |
135 |
Q |
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| T |
38479252 |
tgggaaaggaagtatagatgt |
38479272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 41905363 - 41905483
Alignment:
| Q |
15 |
tatctctttaatcagtaaccataaatggatccacatccccaagatcagcaaccaaaggtttcatatcatctgtatcttcatcttctggcacaaagtaagt |
114 |
Q |
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| T |
41905363 |
tatctcttcaatcagtaaccataaatggatccacatccccaagatcagcaagcaaaggtttcatatcatcttcatctccatcttctggcacaaagtaagt |
41905462 |
T |
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| Q |
115 |
tgggaaaggaagtatagatgt |
135 |
Q |
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| T |
41905463 |
tgggaaaggaagtatagatgt |
41905483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 1310913 - 1311033
Alignment:
| Q |
15 |
tatctctttaatcagtaaccataaatggatccacatccccaagatcagcaaccaaaggtttcatatcatctgtatcttcatcttctggcacaaagtaagt |
114 |
Q |
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| T |
1310913 |
tatctctttaatcaacaaccataaatggatcaacatctccaagatcagcaatcaaaggttccatatcatcagtatcttcatcttctggcacaaagtaagt |
1311012 |
T |
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| Q |
115 |
tgggaaaggaagtatagatgt |
135 |
Q |
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| T |
1311013 |
tgggaaaggaagtatagatgt |
1311033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 1306445 - 1306531
Alignment:
| Q |
48 |
catccccaagatcagcaaccaaaggtttcatatcatctgtatcttcatcttctggcacaaagtaagttgggaaaggaagtatagatg |
134 |
Q |
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| T |
1306445 |
catctccaagatcaacaaccaaatgtttcatatcctcagtatgttcatcctctggtacatagtaagttgggaaaggaagtatagatg |
1306531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 1311079 - 1311121
Alignment:
| Q |
133 |
tgtagctcccgggacctgcatagtgcacatcatacaaagagaa |
175 |
Q |
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| T |
1311079 |
tgtagctcctgggacctgcattgtgcacatcatacaaagagaa |
1311121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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