View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16441_low_1 (Length: 547)
Name: NF16441_low_1
Description: NF16441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16441_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 11 - 532
Target Start/End: Complemental strand, 48483330 - 48482804
Alignment:
| Q |
11 |
catcatcattcgtcgtagattactgcataatttaagaattcattatagattacggtataattcaagaataaaccatcaatttaatctctaaactatcact |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48483330 |
catcatcattcgtcgtagattactgcataatttaagaattcattatagattactgtataattcaagaataaaccatcaatttaatctctaaactatcact |
48483231 |
T |
|
| Q |
111 |
cttcaatttaatccctacattataaaatatactaaatagtccttaaactatataaagtccgtcagtttagcctataaagtatataaaaatccaccaatgt |
210 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48483230 |
cttcaatttaatccctacattataaaatatattaaatagtccttaaactatataaagtccgtcagtttagcctataaagtatataaaaatccaccaatgt |
48483131 |
T |
|
| Q |
211 |
agtcccaaatatctcaatgcatgatttttatgcatgctggagtgctcttccgttagacacgacaaccggtttcttgctagcaagtcagtttgaggaccgc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48483130 |
agtcccaaatatctcaatgcatgatttttatgcatgcttgagtgctcttccgttagacacgacaaccggtttcttgctagcaagtcagtttgaggaccgc |
48483031 |
T |
|
| Q |
311 |
tttggagcaggagcaaccatcaattcagaagacactgctacatctgt-----tttggtgctttcatcatacatgcctttggttgcaataacaagaaagaa |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48483030 |
tttggagcaggagcaaccatcaattcagaagacactgctacatctgtgattctttggtgctttcatcatacatgcctttggttgcaataacaagaaagaa |
48482931 |
T |
|
| Q |
406 |
atagattttagatgcaatatcatatttctcgtccttgtattttggaaaaacttgtaaaacaatttatcagctaatccaattcttaatataatcatacaag |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48482930 |
atagattttagatgcaatatcatatttctcgtccttgtattttggaaaaacttgtaaaacaatttatcagctaatccaattcttaatataatcatacaag |
48482831 |
T |
|
| Q |
506 |
actacttacctacaaaaggtcgttggt |
532 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
48482830 |
actacttacctacaaaaggtcgttggt |
48482804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 14198212 - 14198247
Alignment:
| Q |
74 |
aagaataaaccatcaatttaatctctaaactatcac |
109 |
Q |
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| T |
14198212 |
aagaataaacgatcaatttaatctctaaactatcac |
14198247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 47664942 - 47665009
Alignment:
| Q |
114 |
caatttaatccctacattataaaa-tatactaaatagtccttaaactatataaagtccgtcagtttag |
180 |
Q |
| |
|
|||||||||||||| | ||||||| ||||| |||||||| | |||||||||||| ||||||| ||||| |
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|
| T |
47664942 |
caatttaatccctatactataaaaatataccaaatagtcttcaaactatataaaatccgtcaatttag |
47665009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 2205184 - 2205217
Alignment:
| Q |
75 |
agaataaaccatcaatttaatctctaaactatca |
108 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |
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| T |
2205184 |
agaataaaccatcaatttaatccctaaactatca |
2205217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 35464912 - 35464875
Alignment:
| Q |
76 |
gaataaaccatcaatttaatctctaaactatcactctt |
113 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||| |
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|
| T |
35464912 |
gaataaaccatcaatttagtctctaaaatatcactctt |
35464875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 41811770 - 41811803
Alignment:
| Q |
75 |
agaataaaccatcaatttaatctctaaactatca |
108 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
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|
| T |
41811770 |
agaataaaccatcaattcaatctctaaactatca |
41811803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 26004122 - 26004158
Alignment:
| Q |
76 |
gaataaaccatcaatttaatctctaaactatcactct |
112 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||| |
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|
| T |
26004122 |
gaataaaccatcaatttagtctctaaattatcactct |
26004158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 43279044 - 43279076
Alignment:
| Q |
79 |
taaaccatcaatttaatctctaaactatcactc |
111 |
Q |
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|
||||||||||||||| ||||||||||||||||| |
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| T |
43279044 |
taaaccatcaatttagtctctaaactatcactc |
43279076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 12671329 - 12671285
Alignment:
| Q |
78 |
ataaaccatcaatttaatctctaaactatcactcttcaatttaat |
122 |
Q |
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|||||||||||||||||||| | || ||||||||||||| ||||| |
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| T |
12671329 |
ataaaccatcaatttaatctttcaattatcactcttcaacttaat |
12671285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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