View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16441_low_10 (Length: 310)
Name: NF16441_low_10
Description: NF16441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16441_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 44 - 306
Target Start/End: Complemental strand, 50272171 - 50271898
Alignment:
| Q |
44 |
tgaagtgaagaaagggtgatgcagcggttgtttagagccatagggtgctttatatatactcccaatgttacatgtatgcaatg-----tatattcattca |
138 |
Q |
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| T |
50272171 |
tgaagtgaagaaagggtgatgcagcggttgtttagagccatagggtgctttatatatactcccaatgttacatgtatgcaatgcaatgtatattcattca |
50272072 |
T |
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| Q |
139 |
tgtcatgtatgataataaataaagttgtactaataataaccggtccaggtaatgtaccaaattttgtaggtgagaatcgatgatgtgtatggtttatgcg |
238 |
Q |
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| T |
50272071 |
tgtcatgtatgataataaataaagttgtactaataataaccggtccaggtaatgtaccaaattttgtaggtgagaatcgatgatgtgtatggtttatgcg |
50271972 |
T |
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| Q |
239 |
tatttgttttgaaggtgttggggttccacctag------acggaagaagcaacacattttttagggttaatagt |
306 |
Q |
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| T |
50271971 |
tttttgttttgaaggtggtggggttccacatagacagaaacagaagaagcaacacttttttgagggttaatagt |
50271898 |
T |
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