View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16441_low_2 (Length: 426)

Name: NF16441_low_2
Description: NF16441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16441_low_2
NF16441_low_2
[»] chr1 (10 HSPs)
chr1 (14-112)||(40813002-40813100)
chr1 (194-284)||(40813182-40813272)
chr1 (369-414)||(40813356-40813401)
chr1 (23-78)||(15728128-15728183)
chr1 (30-78)||(12268307-12268355)
chr1 (23-78)||(14099706-14099761)
chr1 (23-78)||(27740493-27740548)
chr1 (23-78)||(52575457-52575512)
chr1 (23-76)||(43702808-43702862)
chr1 (14-78)||(4248926-4248990)
[»] scaffold0166 (1 HSPs)
scaffold0166 (23-78)||(7643-7697)
[»] chr5 (4 HSPs)
chr5 (23-78)||(24765146-24765200)
chr5 (23-71)||(33530990-33531038)
chr5 (31-76)||(23418815-23418860)
chr5 (30-78)||(14126185-14126233)
[»] chr4 (3 HSPs)
chr4 (29-76)||(36233813-36233860)
chr4 (31-78)||(48085467-48085514)
chr4 (23-78)||(229845-229900)
[»] chr6 (2 HSPs)
chr6 (29-78)||(6605971-6606020)
chr6 (23-76)||(16317207-16317260)
[»] chr7 (4 HSPs)
chr7 (23-78)||(9907202-9907257)
chr7 (29-78)||(2472925-2472974)
chr7 (36-73)||(15613959-15613996)
chr7 (31-78)||(31115210-31115257)
[»] chr2 (4 HSPs)
chr2 (23-74)||(43994275-43994326)
chr2 (23-71)||(16870309-16870357)
chr2 (23-70)||(15735978-15736025)
chr2 (37-78)||(15362194-15362235)
[»] scaffold0050 (1 HSPs)
scaffold0050 (29-78)||(34456-34505)
[»] chr8 (2 HSPs)
chr8 (23-70)||(18698936-18698983)
chr8 (40-74)||(3779694-3779728)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 40813002 - 40813100
Alignment:
Q  14 attaaagatagaggatgcttatatagtcaccattctctataagcaccaaacattttctctccacattttctatgagtggtgttggaaccccatggatta 112  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40813002 attaaagatagaggatgcttatatagccacccttctctataagcaccaaacattttctcttcacattttctatgagtggtgttggaaccccatggatta 40813100  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 194 - 284
Target Start/End: Original strand, 40813182 - 40813272
Alignment:
Q  194 gaggttggattgcggcatatttacggtatccgttatagtttctttgtttcacttcactgtttgtcttgtgtagtgtagctttcaataatat 284  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40813182 gaggttggattgccgcatatttacggtatccgttatagtttctttgtttcacttcactgtttgtcttgtgtagtgtagctttcaataatat 40813272  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 369 - 414
Target Start/End: Original strand, 40813356 - 40813401
Alignment:
Q  369 ctactcattagttctcgtctcttatagaatttagaatgcccatagt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  40813356 ctactcattagttctcgtctcttatagaatttagaatgcccatagt 40813401  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 15728183 - 15728128
Alignment:
Q  23 agaggatgcttatatagtcaccattctctataagcaccaaacattttctctccaca 78  Q
    ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  15728183 agagggtgcttacatagccaccattctctataagcaccaaacattttctctccaca 15728128  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 12268307 - 12268355
Alignment:
Q  30 gcttatatagtcaccattctctataagcaccaaacattttctctccaca 78  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  12268307 gcttatatagccacccttctctataagcaccaaacattttctctccaca 12268355  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 14099706 - 14099761
Alignment:
Q  23 agaggatgcttatatagtcaccattctctataagcaccaaacattttctctccaca 78  Q
    ||||| |||||||||||||||| |||| ||||||||||||| ||||||||||||||    
T  14099706 agagggtgcttatatagtcacctttctatataagcaccaaatattttctctccaca 14099761  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 27740548 - 27740493
Alignment:
Q  23 agaggatgcttatatagtcaccattctctataagcaccaaacattttctctccaca 78  Q
    ||||| ||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  27740548 agagggtgcttatatagccacccttctctataagcaccaaatattttctctccaca 27740493  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 52575512 - 52575457
Alignment:
Q  23 agaggatgcttatatagtcaccattctctataagcaccaaacattttctctccaca 78  Q
    ||||| ||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  52575512 agagggtgcttatatagccacccttctctataagcaccaaatattttctctccaca 52575457  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 43702808 - 43702862
Alignment:
Q  23 agaggatgcttatatagtcaccattctctat-aagcaccaaacattttctctcca 76  Q
    ||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||    
T  43702808 agagggtgcttatatagtcacccttctctataaagcaccaaatattttctctcca 43702862  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 4248926 - 4248990
Alignment:
Q  14 attaaagatagaggatgcttatatagtcaccattctctataagcaccaaacattttctctccaca 78  Q
    |||||||| |||||  |||||||||  |||| |||||  ||||||||||||||||||||||||||    
T  4248926 attaaagagagagggagcttatataaccacccttctccgtaagcaccaaacattttctctccaca 4248990  T

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Target: scaffold0166 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 7643 - 7697
Alignment:
Q  23 agaggatgcttatatagtcaccattctctataagcaccaaacattttctctccaca 78  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7643 agagggtgcttatatagtcacc-ttctctataagcaccaaacattttctctccaca 7697  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 24765146 - 24765200
Alignment:
Q  23 agaggatgcttatatagtcaccattctctataagcaccaaacattttctctccaca 78  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24765146 agagggtgcttatatagtcacc-ttctctataagcaccaaacattttctctccaca 24765200  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 33531038 - 33530990
Alignment:
Q  23 agaggatgcttatatagtcaccattctctataagcaccaaacattttct 71  Q
    ||||| ||||||||||| || | ||||||||||||||||||||||||||    
T  33531038 agagggtgcttatatagccatccttctctataagcaccaaacattttct 33530990  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 23418860 - 23418815
Alignment:
Q  31 cttatatagtcaccattctctataagcaccaaacattttctctcca 76  Q
    |||| |||| ||||||||||||||| | ||||||||||||||||||    
T  23418860 cttacataggcaccattctctataaactccaaacattttctctcca 23418815  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 14126185 - 14126233
Alignment:
Q  30 gcttatatagtcaccattctctataagcaccaaacattttctctccaca 78  Q
    |||||||||| |||| |||||||||| || | |||||||||||||||||    
T  14126185 gcttatatagccacccttctctataaacatctaacattttctctccaca 14126233  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 36233860 - 36233813
Alignment:
Q  29 tgcttatatagtcaccattctctataagcaccaaacattttctctcca 76  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36233860 tgcttatatagccaccattctctataagcaccaaacattttctctcca 36233813  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 48085514 - 48085467
Alignment:
Q  31 cttatatagtcaccattctctataagcaccaaacattttctctccaca 78  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  48085514 cttatatagctaccattctctataagcaccaaacattttctctccaca 48085467  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 229900 - 229845
Alignment:
Q  23 agaggatgcttatatagtcaccattctctataagcaccaaacattttctctccaca 78  Q
    ||||| ||||||||||  |||| ||||||||||||||||||||  |||||||||||    
T  229900 agagggtgcttatataaccacccttctctataagcaccaaacacattctctccaca 229845  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 6606020 - 6605971
Alignment:
Q  29 tgcttatatagtcaccattctctataagcaccaaacattttctctccaca 78  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  6606020 tgcttatatagccacccttctctataagcaccaaacattttctctccaca 6605971  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 16317260 - 16317207
Alignment:
Q  23 agaggatgcttatatagtcaccattctctataagcaccaaacattttctctcca 76  Q
    ||||||||||||||||| |||| ||||||| | |||||||| ||||||||||||    
T  16317260 agaggatgcttatatagccacccttctctagaggcaccaaatattttctctcca 16317207  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 9907202 - 9907257
Alignment:
Q  23 agaggatgcttatatagtcaccattctctataagcaccaaacattttctctccaca 78  Q
    ||||| |||||||||| ||||| |||||||||||||||||||||||| ||||||||    
T  9907202 agagggtgcttatataatcacccttctctataagcaccaaacattttatctccaca 9907257  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 2472974 - 2472925
Alignment:
Q  29 tgcttatatagtcaccattctctataagcaccaaacattttctctccaca 78  Q
    |||||||||| ||||| |||||||||||||||||| ||||| ||||||||    
T  2472974 tgcttatataatcacccttctctataagcaccaaatattttgtctccaca 2472925  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 15613959 - 15613996
Alignment:
Q  36 atagtcaccattctctataagcaccaaacattttctct 73  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  15613959 atagtcaccattctctataagtaccaaacattttctct 15613996  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 31115257 - 31115210
Alignment:
Q  31 cttatatagtcaccattctctataagcaccaaacattttctctccaca 78  Q
    |||||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  31115257 cttatataatcacccttctctatatgcaccaaacatcttctctccaca 31115210  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 43994326 - 43994275
Alignment:
Q  23 agaggatgcttatatagtcaccattctctataagcaccaaacattttctctc 74  Q
    ||||| ||||||||||| |||| ||||||||||| |||||||||||||||||    
T  43994326 agagggtgcttatatagccacccttctctataagtaccaaacattttctctc 43994275  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 16870309 - 16870357
Alignment:
Q  23 agaggatgcttatatagtcaccattctctataagcaccaaacattttct 71  Q
    ||||| ||||||||||| || | ||||||||||||||||||||||||||    
T  16870309 agagggtgcttatatagccatccttctctataagcaccaaacattttct 16870357  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 15736025 - 15735978
Alignment:
Q  23 agaggatgcttatatagtcaccattctctataagcaccaaacattttc 70  Q
    ||||| ||||||||||  |||| |||||||||||||||||||||||||    
T  15736025 agagggtgcttatataaccacccttctctataagcaccaaacattttc 15735978  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 15362194 - 15362235
Alignment:
Q  37 tagtcaccattctctataagcaccaaacattttctctccaca 78  Q
    |||||||| ||||||||||||| | |||||||||||||||||    
T  15362194 tagtcacctttctctataagcatcgaacattttctctccaca 15362235  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 34456 - 34505
Alignment:
Q  29 tgcttatatagtcaccattctctataagcaccaaacattttctctccaca 78  Q
    ||||||||||| |||| ||||||||||||| |||| ||||||||||||||    
T  34456 tgcttatatagccacccttctctataagcatcaaatattttctctccaca 34505  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 18698983 - 18698936
Alignment:
Q  23 agaggatgcttatatagtcaccattctctataagcaccaaacattttc 70  Q
    ||||| ||||||||||  |||| |||||||||||||||||||||||||    
T  18698983 agagggtgcttatataaccacccttctctataagcaccaaacattttc 18698936  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 3779728 - 3779694
Alignment:
Q  40 tcaccattctctataagcaccaaacattttctctc 74  Q
    ||||| |||||||||||||||||||||||||||||    
T  3779728 tcacccttctctataagcaccaaacattttctctc 3779694  T

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