View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16441_low_3 (Length: 401)
Name: NF16441_low_3
Description: NF16441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16441_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 14 - 385
Target Start/End: Complemental strand, 17745475 - 17745104
Alignment:
| Q |
14 |
tacttcaagtaatagtagaaaaaaccaagttcatagaaagagtcttcttgctactcttggttgcaaatgctcttgttatgataagaattctgttgatgta |
113 |
Q |
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| T |
17745475 |
tacttcaagtaatagtagaaaaaatcaagttcatagaaagagtcttcttgctactcttggttgcaaatgctcttgttatgataagaattctgttgatgta |
17745376 |
T |
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| Q |
114 |
agtgatcatgcaggtgaaatcagcttcaacaaaagtgcagttcaaggaaaaacaacctcagaaaaactcttcaaacatgatcaagatgcttctgatcatt |
213 |
Q |
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| T |
17745375 |
agtgatcatgcaggtgaaatcagcttcaacaaaagtgcagttcaaggaaaaacaacctcagaaaaactcttcaaacatgatcaagatgcttctgatcatt |
17745276 |
T |
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| Q |
214 |
caattaagaataagaaaaccgagactcgtgctgcatcggaactcttgatgaacaaagatatctacttacaaaaacaagaaaaggtttctccttacaaaat |
313 |
Q |
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| T |
17745275 |
caattaagaataagaaaaccgagacgcgtgctacatcggaactcttgatgaacaaagatgtctacttgcaaaaacaagaaaaggtttctccttacaaaat |
17745176 |
T |
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| Q |
314 |
gcaacttcaacaagtagagaatccaaggaaaacattggaagtgtttggttcaccaatattagatgaaagatg |
385 |
Q |
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| T |
17745175 |
gcaacttcaacaagtagataatccaaggaaaacattggaagtgtttggttcaccaatattagatgaaagatg |
17745104 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 24336410 - 24336469
Alignment:
| Q |
77 |
caaatgctcttgttatgataagaattctgttgatgtaagtgatcatgcaggtgaaatcag |
136 |
Q |
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| T |
24336410 |
caaatgctcttgttctgataagaattctgttgatataaatgaccatgcaagtgaaatcag |
24336469 |
T |
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