View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16441_low_4 (Length: 376)
Name: NF16441_low_4
Description: NF16441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16441_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 360
Target Start/End: Complemental strand, 39964587 - 39964238
Alignment:
| Q |
11 |
tcatcatcatcatgctctttctcctacgatcatgatctaccatcctacacccatcaacaacaacaaaacacaactatataataatattttaaagaaagaa |
110 |
Q |
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| T |
39964587 |
tcatcatcatcatgctctttctcctacgatcatgatctaccatcctacacccatcaacaacaacaaaacacaactatataataatattttaaagaaagaa |
39964488 |
T |
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| Q |
111 |
agtgaaaacaaaatagtgaaataagaggttatagttactcatgagaaagaggaagagggtgcatgatccctgaaagacaaagaggaagaccatgacgaat |
210 |
Q |
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| T |
39964487 |
agtgaaaacaaaatagtgaaataagaggttatagttactcatgagaaagaggaagagggtgcatgatccctgaaagacaaagaggaagaccatgacgaat |
39964388 |
T |
|
| Q |
211 |
gtttaacatggattgcattatttttggttaatttctttctttgcaacaatagtactttgtaaaggacaacactccttttgttattgttgttgttttgtgg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39964387 |
gtttaacatggattgcattatttttggttaatttctttctttgcaacaatagtactttgtaaaggacaacactccttttgttattgttgttgttttgtgg |
39964288 |
T |
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| Q |
311 |
tggtgacgtctctcttgttctgtccacgagccatttattatacattcaat |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39964287 |
tggtgacgtctctcttgttctgtccacgagccatttattatacattcaat |
39964238 |
T |
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