View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16441_low_5 (Length: 374)
Name: NF16441_low_5
Description: NF16441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16441_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 5473803 - 5474055
Alignment:
| Q |
1 |
gagtccaggattagtcaggccagatatcttgcatgaaagggacaccaaatacaaaatttcctcagagagccttaaaagctcgaggattgagattccagaa |
100 |
Q |
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| T |
5473803 |
gagtccaggattagtgaggccagatatcttgcatgagagggacaccaaatacaaaatttcctcagagagccttaaaagctcgaggattgagattccagag |
5473902 |
T |
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| Q |
101 |
ccagagatgatccacccaatggctgactattggaaacagcatggaaaaggttttgtcattgacttccaagaaactgagatgaaaaagagggctcctttcc |
200 |
Q |
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| T |
5473903 |
ccagagatgatccacccaatggctgactattggaagcaacatggcaaaggctttgtcattgactttgaagaaactgaaatgaaaaagagggctccttttc |
5474002 |
T |
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| Q |
201 |
cttga--atatagctatatagta-gtatatgtgatcttaagtgaataaagcata |
251 |
Q |
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| T |
5474003 |
cttgaacatatagatata-actatatatatgtaatcttgagtgaataaagcata |
5474055 |
T |
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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 5479943 - 5479996
Alignment:
| Q |
59 |
tcctcagagagccttaaaagctcgaggattgagattccagaaccagagatgatc |
112 |
Q |
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| T |
5479943 |
tcctcagcgagcctgaaaagctcgaggattgagattccagatccataaatgatc |
5479996 |
T |
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