View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16441_low_7 (Length: 344)
Name: NF16441_low_7
Description: NF16441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16441_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 46 - 219
Target Start/End: Complemental strand, 24232537 - 24232364
Alignment:
| Q |
46 |
aaggagatatgaagttcagcactgccattattgtttcattcctattccttgctgagttttgtgcagttcaatctgtggtccttgacatatcaaaatttgg |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24232537 |
aaggagatatgaagttcagcactgccattattgtttcattcctattccttgctgagttttgtgcagttcaatctctggtccttgacatatcaaaatttgg |
24232438 |
T |
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| Q |
146 |
tggagcaccaaattcagatataaccctggtattgattattcctaatgaattcacattgagaaaacaattatttc |
219 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24232437 |
tggagcaccaaattcagatataaccctggtattaattattcctaatgaattcacattgagaaaacaattatttc |
24232364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 46 - 166
Target Start/End: Complemental strand, 24244257 - 24244137
Alignment:
| Q |
46 |
aaggagatatgaagttcagcactgccattattgtttcattcctattccttgctgagttttgtgcagttcaatctgtggtccttgacatatcaaaatttgg |
145 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||||| |
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| T |
24244257 |
aaggagatatgaagttcagcactgtcattattgtttcattcctattccttgctgacttttgtgcagctcaatctggggtccttgacatagcaaaatttgg |
24244158 |
T |
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| Q |
146 |
tggagcaccaaattcagatat |
166 |
Q |
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||| ||||||||| ||||| |
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| T |
24244157 |
aggaaaaccaaattctgatat |
24244137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 46 - 166
Target Start/End: Original strand, 24297941 - 24298061
Alignment:
| Q |
46 |
aaggagatatgaagttcagcactgccattattgtttcattcctattccttgctgagttttgtgcagttcaatctgtggtccttgacatatcaaaatttgg |
145 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||||| |
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| T |
24297941 |
aaggagatatgaagttcagcactgtcattattgtttcattcctattccttgctgacttttgtgcagctcaatctggggtccttgacatagcaaaatttgg |
24298040 |
T |
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| Q |
146 |
tggagcaccaaattcagatat |
166 |
Q |
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||| ||||||||| ||||| |
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| T |
24298041 |
aggaaaaccaaattctgatat |
24298061 |
T |
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