View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16441_low_8 (Length: 332)
Name: NF16441_low_8
Description: NF16441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16441_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 20950059 - 20949749
Alignment:
| Q |
1 |
aactaagctaagaaaatatacagcagataaagcaagtagtaagcttctttatatataactccctcttcctttcaacatgatgtgaatgaccgatatggga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20950059 |
aactaagctaagaaaatatacagcagataaagcaagtagtaagcttctttatatataactccctcttcctttcaacatgatgtgaatgaccgatatggga |
20949960 |
T |
|
| Q |
101 |
catacaaaataccttctgttaataatatttgataatatgttttcattatcactaatcacgtccatgttctaattcaattaaaactataccacaaacctgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20949959 |
catacaaaataccttctgttaataatatttgataatatgttttcattatc-ctaatcacgtccatgttctaattcaattaaaactataccacaaacctgt |
20949861 |
T |
|
| Q |
201 |
aaggttccgactatgcatacctctacgtaccgaattatttgaaaattacgaaccgtggacccaaacgtgtaccacgtaccaaagcaaattgtgaacgtgt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20949860 |
aaggttccgactatgcatacctctacgtaccgaattatttgaaaattacgaaccgtggacccaaacgtgtaccacgtaccaaagcaaattgtgaacgtgt |
20949761 |
T |
|
| Q |
301 |
gactatggttca |
312 |
Q |
| |
|
|||||||||||| |
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| T |
20949760 |
gactatggttca |
20949749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 307
Target Start/End: Complemental strand, 51634764 - 51634662
Alignment:
| Q |
207 |
ccgactatgcatacctc-tacgtaccgaattatttgaaaattacgaaccgtggacccaaacgtgtaccacgtaccaaagcaaattgtgaa-cgtgtgact |
304 |
Q |
| |
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||||||||| ||||| | || |||||||||| ||| || |||||||||||| |||| ||| |||||||||||| |||| ||||| ||| ||||||||| |
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| T |
51634764 |
ccgactatgtataccccctatgtaccgaattctttaaatgttacgaaccgtgtacccgaacccgtaccacgtaccgaagcgaattgcgaaccgtgtgact |
51634665 |
T |
|
| Q |
305 |
atg |
307 |
Q |
| |
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||| |
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|
| T |
51634664 |
atg |
51634662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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