View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16441_low_9 (Length: 312)
Name: NF16441_low_9
Description: NF16441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16441_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 157 - 302
Target Start/End: Complemental strand, 55507778 - 55507630
Alignment:
| Q |
157 |
atcatttggtcaagtttctcttgcaccatggcatgtgctagtgttgaaacagaagggaacctatcagaggcagaagaa---ctctctgcttcctctgaag |
253 |
Q |
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| T |
55507778 |
atcatttggtcaagtctctcttgcaccatggcatgtgctagtgttgaaacagaagggaacctatcagaggcagaagaagaactctctgcttcctctgaag |
55507679 |
T |
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| Q |
254 |
aagaaacactaaacctgttgctactgcaacacaaggccttgcatcctct |
302 |
Q |
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| T |
55507678 |
aagaaacactaaacctgttgctactgcaacacaaggccttgcatcctct |
55507630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 55507919 - 55507838
Alignment:
| Q |
16 |
atcatctccatcatagactccctgaaatcctctctaggatcataagaacacttctcagttactaacattacaacaaacttag |
97 |
Q |
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| T |
55507919 |
atcatctccatcatagactccctgaaatcctctctaggatcataagaacacttctcagttgctaacattacaacaaacttag |
55507838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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