View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16442_high_2 (Length: 278)
Name: NF16442_high_2
Description: NF16442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16442_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 261
Target Start/End: Original strand, 2387518 - 2387779
Alignment:
| Q |
12 |
atgaaagcaaggagaattagcagtcaagaatactgtcattagataactcaataaaagttca------------ccaagaattacacatataatgttgcag |
99 |
Q |
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| T |
2387518 |
atgaaagcaaggagaattagcagtcaagaatactgtcattagataactcaataaaagttcaccaattaattcaccaagaattacacatataatgttgcag |
2387617 |
T |
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| Q |
100 |
caatactttcatgaaaattaaattgcaaaacatcaaataagggagtacgtatacattaaaacagcttaaggcaatccaaaacagtcatgaaagcctgcca |
199 |
Q |
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| T |
2387618 |
caatactttcatgaaaattaaattgcaaaacatcaaataagggagtacgtatacattaaaacagcttaaggcaatccaaaacagtcatgaaagcctgcca |
2387717 |
T |
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| Q |
200 |
aatcttgaacatgaaacaaatggtaaatacatatgctatgcggacaatcttgcagatggaat |
261 |
Q |
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| T |
2387718 |
agtcttgaacatgaaacaaatggtaaatacatatgctatgcggacaatcttgcagatggaat |
2387779 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 13861011 - 13861066
Alignment:
| Q |
15 |
aaagcaaggagaattagcagtcaagaatactgtcattagataactcaataaaagtt |
70 |
Q |
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| T |
13861011 |
aaagcaaggagaattagcggtcaagaatattctcatcagttaactcaataacagtt |
13861066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 13861093 - 13861185
Alignment:
| Q |
85 |
catataatgttgcagcaatactttcatgaaaattaaattgcaaaacatcaaataagggagtacgtatacattaaaacagcttaaggcaatcca |
177 |
Q |
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| T |
13861093 |
catataatattgcagctatagttccatcaaaataaaatttcaaaacatcaaataagttcatatgtatatattaaaacaacttaacgcgatcca |
13861185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 52526307 - 52526362
Alignment:
| Q |
15 |
aaagcaaggagaattagcagtcaagaatactgtcattagataactcaataaaagtt |
70 |
Q |
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| T |
52526307 |
aaagcaaggagaattagcggtcaagaatattctcatcagttaactcaataacagtt |
52526362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 52526389 - 52526481
Alignment:
| Q |
85 |
catataatgttgcagcaatactttcatgaaaattaaattgcaaaacatcaaataagggagtacgtatacattaaaacagcttaaggcaatcca |
177 |
Q |
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| T |
52526389 |
catataatattgcagctatagttccatcaaaataaaatttcaaaacatcaaataagttcatatgtatatattaaaacaacttaacgcgatcca |
52526481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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