View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16442_low_1 (Length: 341)

Name: NF16442_low_1
Description: NF16442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16442_low_1
NF16442_low_1
[»] chr1 (1 HSPs)
chr1 (26-324)||(42236141-42236439)


Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 26 - 324
Target Start/End: Original strand, 42236141 - 42236439
Alignment:
Q  26 agagaataccgtaaaggtaattggacaatccaagaaacacttattctcatcacagccaagaaactagacgatgaacgtagactaagaaacacttcaacat 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42236141 agagaataccgtaaaggtaattggacaatccaagaaacacttattctcatcacagccaagaaactagacgatgaacgtagactaagaaacacttcaacat 42236240  T
Q  126 caacctcaactccatcatcctcatcacaagacccaaataggacaccaaacactacacatgtcacctccattgcaagccctagcaccagtaccagcaagag 225  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42236241 caacctcaactccatcatcatcatcacaagacccaaataggacaccaaacactacacatgtcacctccattgcaagccctagcaccagtaccagcaggag 42236340  T
Q  226 cagtggtgaactgagatggaaatgggtggaaaactattgttggagccatggttgtttgagaagccagaatcaatgtaatgataaatgggataacttact 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42236341 cagtggtgaactgagatggaaatgggtggaaaactattgttggagccatggttgtttgagaagccagaatcaatgtaatgataaatgggataacttact 42236439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University